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Author Details

Arnab Pain
King Abdullah University of Science and Technology
1997
217
59
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35960997The first case of artemisinin treatment failure of Plasmodium falciparum imported to Oman from Tanzania.J Travel Med2023
37884813DNA-binding protein PfAP2-P regulates parasite pathogenesis during malaria parasite blood stages.Nat Microbiol2023
35844053Chromosome-level genome assembly defines female-biased genes associated with sex determination and differentiation in the human blood fluke Schistosoma japonicum.Mol Ecol Resour2023
37475040Impact of the SARS-CoV-2 nucleocapsid 203K/204R mutations on the inflammatory immune response in COVID-19 severity.Genome Med2023
37293082PfAP2-MRP DNA-binding protein is a master regulator of parasite pathogenesis during malaria parasite blood stages.bioRxiv2023
36626091Outcome of Transplant Recipients Infected with Omicron BA.1 and BA.2: A Single-Center Retrospective Study in Saudi Arabia.J Epidemiol Glob Health2023
36517330Plasmodium malariae: the persisting mysteries of a persistent parasite.Trends Parasitol2023
36847534miR-34c-3p Regulates Protein Kinase A Activity Independent of cAMP by Dicing <i>prkar2b</i> Transcripts in Theileria annulata-Infected Leukocytes.mSphere2023
36611193The gyrfalcon (Falco rusticolus) genome.G3 (Bethesda)2023
34738616Metagenomics-driven rapid diagnosis of an imported fatal case of rare amoebic meningoencephalitis.J Travel Med2022
35401459Pangenome Analysis of the Soilborne Fungal Phytopathogen <i>Rhizoctonia solani</i> and Development of a Comprehensive Web Resource: RsolaniDB.Front Microbiol2022
35758754Variants in Bedaquiline-Candidate-Resistance Genes: Prevalence in Bedaquiline-Naive Patients, Effect on MIC, and Association with Mycobacterium tuberculosis Lineage.Antimicrob Agents Chemother2022
36619746Genome-wide transposon mutagenesis analysis of <i>Burkholderia pseudomallei</i> reveals essential genes for <i>in vitro</i> and <i>in vivo</i> survival.Front Cell Infect Microbiol2022
36333336Creation and preclinical evaluation of genetically attenuated malaria parasites arresting growth late in the liver.NPJ Vaccines2022
36329197Methanotrophy by a Mycobacterium species that dominates a cave microbial ecosystem.Nat Microbiol2022
35882887Theileria annulata histone deacetylase 1 (TaHDAC1) initiates schizont to merozoite stage conversion.Sci Rep2022
35151353Global research alliance in infectious disease: a collaborative effort to combat infectious diseases through dissemination of portable sequencing.BMC Res Notes2022
35105893SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load.Nat Commun2022
33234239Host-directed editing of the SARS-CoV-2 genome.Biochem Biophys Res Commun2021
33630074Short sequence motif dynamics in the SARS-CoV-2 genome suggest a role for cytosine deamination in CpG reduction.J Mol Cell Biol2021
33821249Simultaneous detection and mutation surveillance of SARS-CoV-2 and multiple respiratory viruses by rapid field-deployable sequencing.Med2021
33592301Co-occurrence of mcr-1 and mcr-8 genes in multi-drug-resistant Klebsiella pneumoniae from a 2015 clinical isolate.Int J Antimicrob Agents2021
33786197A Robust, Safe, and Scalable Magnetic Nanoparticle Workflow for RNA Extraction of Pathogens from Clinical and Wastewater Samples.Glob Chall2021
33778250Quick and Easy Assembly of a One-Step qRT-PCR Kit for COVID-19 Diagnostics Using In-House Enzymes.ACS Omega2021
33859212Antennal transcriptome sequencing and identification of candidate chemoreceptor proteins from an invasive pest, the American palm weevil, Rhynchophorus palmarum.Sci Rep2021
33888092Plasmodium vinckei genomes provide insights into the pan-genome and evolution of rodent malaria parasites.BMC Biol2021
33687767Pheromone receptor of the globally invasive quarantine pest of the palm tree, the red palm weevil (Rhynchophorus ferrugineus).Mol Ecol2021
34673379Whole-genome sequencing as a tool for studying the microevolution of drug-resistant serial Mycobacterium tuberculosis isolates.Tuberculosis (Edinb)2021
34555729Development of the Myzozoan Aquatic Parasite Perkinsus marinus as A Versatile Experimental Genetic Model Organism.Protist2021
34396095Insights into the ancestry evolution of the <i>Mycobacterium tuberculosis</i> complex from analysis of <i>Mycobacterium riyadhense</i>.NAR Genom Bioinform2021
34592986The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching.BMC Biol2021
34413424Author Correction: Antennal transcriptome sequencing and identification of candidate chemoreceptor proteins from an invasive pest, the American palm weevil, Rhynchophorus palmarum.Sci Rep2021
34013262Short sequence motif dynamics in the SARS-CoV-2 genome suggest a role for cytosine deamination in CpG reduction.bioRxiv2021
34145386Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stages.Commun Biol2021
34031558Rapid single-molecule detection of COVID-19 and MERS antigens via nanobody-functionalized organic electrochemical transistors.Nat Biomed Eng2021
33057593Corrigendum to Crohn's Disease Patient Infected With Multiple Co-occurring Nontuberculous Mycobacteria.Inflamm Bowel Dis2021
33415766Meningococcal carriage among Hajj pilgrims, risk factors for carriage and records of vaccination: a study of pilgrims to Mecca.Trop Med Int Health2021
32251396Genetic tool development in marine protists: emerging model organisms for experimental cell biology.Nat Methods2020
33575588Identification of gene fusion events in <i>Mycobacterium tuberculosis</i> that encode chimeric proteins.NAR Genom Bioinform2020
32014024A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic.BMC Med2020
32091380Metagenomics of Imported Multidrug-Resistant Mycobacterium leprae, Saudi Arabia, 2017.Emerg Infect Dis2020
33287434MRE11 Is Crucial for Malaria Parasite Transmission and Its Absence Affects Expression of Interconnected Networks of Key Genes Essential for Life.Cells2020
33053376A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions.Cell Host Microbe2020
33024213SARS-CoV-2 S1 and N-based serological assays reveal rapid seroconversion and induction of specific antibody response in COVID-19 patients.Sci Rep2020
33188233Dynamics and within-host interaction of Theileria lestoquardi and T. ovis among naive sheep in Oman.Sci Rep2020
33352788Performance of Commercially Available Rapid Serological Assays for the Detection of SARS-CoV-2 Antibodies.Pathogens2020
33291713Early Humoral Response Correlates with Disease Severity and Outcomes in COVID-19 Patients.Viruses2020
32830401Novel tumour suppressor roles for GZMA and RASGRP1 in Theileria annulata-transformed macrophages and human B lymphoma cells.Cell Microbiol2020
32822689iSCAN: An RT-LAMP-coupled CRISPR-Cas12 module for rapid, sensitive detection of SARS-CoV-2.Virus Res2020
32850499Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2.Front Cell Infect Microbiol2020
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Collaborators

Co-authored papers 32
Wellcome Sanger Institute
Co-authored papers 25
Wellcome Trust Sanger Institute
Co-authored papers 12
Earlham Institute
Co-authored papers 10
Wellcome Trust Sanger Institute
Co-authored papers 10
Institute of Integrative Biology, University of Liverpool
Co-authored papers 8
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Co-authored papers 8
International Livestock Research Institute (ILRI)
Co-authored papers 7
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CSIR - National Chemical Laboratory
Co-authored papers 5
Vishwakarma University
Co-authored papers 5
Weatherall Institute of Molecular Medicine
Co-authored papers 4
The Wellcome Trust Sanger Institute
Co-authored papers 4
J. Craig Venter Institute
Co-authored papers 4
University of Pennsylvania
Co-authored papers 4
Wellcome Trust Sanger Institute
Co-authored papers 4
Malawi-Liverpool-Wellcome Trust Clinical Research Program
Co-authored papers 4
Co-authored papers 3
College of Applied Medical Sciences, University of Tabuk
Co-authored papers 3
Center for Computational Biology, Johns Hopkins University
Co-authored papers 3
Center for Computational Biology, Johns Hopkins University
Co-authored papers 3
Center for Genomics and Systems Biology
Co-authored papers 3
Edinburgh Clinical Research Facility, University of Edinburgh
Co-authored papers 3
Bio21 Molecular Science and Biotechnology Institute, University of Melbourne
Co-authored papers 3
University of Washington School of Medicine
Co-authored papers 3
University of Cambridge
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European Bioinformatics Institute
Co-authored papers 3
Macquarie University
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University of Geneva
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