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Author Details

Xiaobei Zhao
University of Tennessee Health Science Center
2007
40
26
PMIDPaper TitleJournal TitlePublished Year
35924981DiNAMIC.Duo: detecting somatic DNA copy number differences without a normal reference.Bioinformatics2022
36230665IL-2K35C-moFA, a Long-Acting Engineered Cytokine with Decreased Interleukin 2 Receptor α Binding, Improved the Cellular Selectivity Profile and Antitumor Efficacy in a Mouse Tumor Model.Cancers (Basel)2022
33148669Integrative Analysis of miRNAs Identifies Clinically Relevant Epithelial and Stromal Subtypes of Head and Neck Squamous Cell Carcinoma.Clin Cancer Res2021
34632388UNMASC: tumor-only variant calling with unmatched normal controls.NAR Cancer2021
33436599SCISSOR: a framework for identifying structural changes in RNA transcripts.Nat Commun2021
32552912Upregulation of RIN3 induces endosomal dysfunction in Alzheimer's disease.Transl Neurodegener2020
30529013Identification of a Robust Methylation Classifier for Cutaneous Melanoma Diagnosis.J Invest Dermatol2019
30662871The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma.Front Oncol2019
29483280Swedish Nerve Growth Factor Mutation (NGF<sup>R100W</sup>) Defines a Role for TrkA and p75<sup>NTR</sup> in Nociception.J Neurosci2018
29520015Aberrant GlyRS-HDAC6 interaction linked to axonal transport deficits in Charcot-Marie-Tooth neuropathy.Nat Commun2018
30009279Exceptional Chemotherapy Response in Metastatic Colorectal Cancer Associated With Hyper-Indel-Hypermutated Cancer Genome and Comutation of POLD1 and MLH1.JCO Precis Oncol2017
27064279Amyloid precursor protein-mediated endocytic pathway disruption induces axonal dysfunction and neurodegeneration.J Clin Invest2016
26620551BRPF3-HBO1 regulates replication origin activation and histone H3K14 acetylation.EMBO J2016
27601642TRiC subunits enhance BDNF axonal transport and rescue striatal atrophy in Huntington's disease.Proc Natl Acad Sci U S A2016
25710492A γ-secretase inhibitor, but not a γ-secretase modulator, induced defects in BDNF axonal trafficking and signaling: evidence for a role for APP.PLoS One2015
26076459Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC.PLoS One2015
24194598JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles.Nucleic Acids Res2014
25286194Real-time imaging of axonal transport of quantum dot-labeled BDNF in primary neurons.J Vis Exp2014
24755468Genetic and pharmacological strategies to refunctionalize the von Hippel Lindau R167Q mutant protein.Cancer Res2014
24670763An atlas of active enhancers across human cell types and tissues.Nature2014
24670764A promoter-level mammalian expression atlas.Nature2014
24379417New histone supply regulates replication fork speed and PCNA unloading.J Cell Biol2014
23728943Identification of driver genes in hepatocellular carcinoma by exome sequencing.Hepatology2013
23851456Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.Nat Struct Mol Biol2013
23616551Defective axonal transport of Rab7 GTPase results in dysregulated trophic signaling.J Neurosci2013
22345619GMD: measuring the distance between histograms with applications on high-throughput sequencing reads.Bioinformatics2012
23086945Interaction of antidepressants with the serotonin and norepinephrine transporters: mutational studies of the S1 substrate binding pocket.J Biol Chem2012
21429752Design, synthesis and structure-activity relationship (SAR) studies of 2,4-disubstituted pyrimidine derivatives: dual activity as cholinesterase and Aβ-aggregation inhibitors.Bioorg Med Chem2011
22047616Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data.BMC Genomics2011
21822281Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.Nat Struct Mol Biol2011
21887249Systematic clustering of transcription start site landscapes.PLoS One2011
20099873Mutation versus repair: NEIL1 removal of hydantoin lesions in single-stranded, bulge, bubble, and duplex DNA contexts.Biochemistry2010
21116456Amyloid-β peptide is a substrate of the human 20S proteasome.ACS Chem Neurosci2010
20185759The mouse ortholog of NEIL3 is a functional DNA glycosylase in vitro and in vivo.Proc Natl Acad Sci U S A2010
19906716JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.Nucleic Acids Res2010
20031487The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts.DNA Repair (Amst)2010
19074369Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.Genome Res2009
18543945Superior removal of hydantoin lesions relative to other oxidized bases by the human DNA glycosylase hNEIL1.Biochemistry2008
17323928In vitro ligation of oligodeoxynucleotides containing C8-oxidized purine lesions using bacteriophage T4 DNA ligase.Biochemistry2007
17627905Human endonuclease VIII-like (NEIL) proteins in the giant DNA Mimivirus.DNA Repair (Amst)2007
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Collaborators

University of Copenhagen
Co-authored papers 12
University of Bergen
Co-authored papers 8
Center for Cancer Research, University of Tennessee Health Science Center
Co-authored papers 7
Lineberger Cancer Center, University of North Carolina
Co-authored papers 6
University of California San Diego
Co-authored papers 5
Hospital of Obstetrics and Gynecology, Fudan University
Co-authored papers 5
University of Copenhagen
Co-authored papers 4
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 3
LEO Pharma
Co-authored papers 3
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 3
Center for Integrative Medical Sciences
Co-authored papers 3
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 3
Universitetsbyen 81, Aarhus University
Co-authored papers 3
MRC London Institute of Medical Sciences
Co-authored papers 3
Uniformed Services University of the Health Sciences
Co-authored papers 3
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA)
Co-authored papers 3
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
University of Copenhagen
Co-authored papers 3
Statens Serum Institut
Co-authored papers 2
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 2
RIKEN Center for Life Science Technologies
Co-authored papers 2
Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology
Co-authored papers 2
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Karolinska Institute
Co-authored papers 2
RIKEN Center for Integrative Medical Sciences
Co-authored papers 2
Nagoya City University Graduate School of Medical Sciences
Co-authored papers 2
European Bioinformatics Institute
Co-authored papers 2
Istituto Italiano di Tecnologia
Co-authored papers 2
German Center for Neurodegenerative Diseases (DZNE).
Co-authored papers 2