Author details

Full Name

Lisa M Bramer

Affiliation

ORCID

Career Start Year

2014

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36844425	Missing data in multi-omics integration: Recent advances through artificial intelligence.	Front Artif Intell	2023
37853489	Elucidating regulatory processes of intense physical activity by multi-omics analysis.	Mil Med Res	2023
38085827	PMart Web Application: Marketplace for Interactive Analysis of Panomics Data.	J Proteome Res	2023
37887426	Characterizing Families of Spectral Similarity Scores and Their Use Cases for Gas Chromatography-Mass Spectrometry Small Molecule Identification.	Metabolites	2023
37873084	Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration.		2023
37551970	malbacR: A Package for Standardized Implementation of Batch Correction Methods for Omics Data.	Anal Chem	2023
37961439	Fine-tuning TrailMap: The utility of transfer learning to improve the performance of deep learning in axon segmentation of light-sheet microscopy images.	bioRxiv	2023
37084380	Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics.	J Am Soc Mass Spectrom	2023
37390828	Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6Â months prior to the onset of autoimmunity.	Cell Rep Med	2023
37129113	Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification.	Anal Chem	2023
36622218	<i>pmartR 2.0</i>: A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes.	J Proteome Res	2023
36603806	Spatially Resolved Top-Down Proteomics of Tissue Sections Based on a Microfluidic Nanodroplet Sample Preparation Platform.	Mol Cell Proteomics	2023
36849975	Rapid remodeling of the soil lipidome in response to a drying-rewetting event.	Microbiome	2023
37523489	<i>IsoMatchMS</i>: Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra.	J Am Soc Mass Spectrom	2023
37502972	Decrease in multiple complement protein levels is associated with the development of islet autoimmunity and type 1 diabetes.	medRxiv	2023
37546869	Systematic analysis of the sphingomyelin synthase family in <i>C. elegans</i>.	bioRxiv	2023
35220718	Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?	J Proteome Res	2022
35715395	A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants.	Nat Commun	2022
35763502	Impact of acute temperature and air pollution exposures on adult lung function: A panel study of asthmatics.	PLoS One	2022
35645584	Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk.	Nat Sci Sleep	2022
36014071	Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland.	Microorganisms	2022
35405507	Evaluating predictive relationships between wristbands and urine for assessment of personal PAH exposure.	Environ Int	2022
36394319	A Mineral-Doped Micromodel Platform Demonstrates Fungal Bridging of Carbon Hot Spots and Hyphal Transport of Mineral-Derived Nutrients.	mSystems	2022
35468213	Integration of Infant Metabolite, Genetic, and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by Age 6 Years.	J Clin Endocrinol Metab	2022
35194611	A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants.	bioRxiv	2022
34752721	Proteomic Analysis of Human Lung Development.	Am J Respir Crit Care Med	2022
34514184	Fate, cytotoxicity and cellular metabolomic impact of ingested nanoscale carbon dots using simulated digestion and a triculture small intestinal epithelial model.	NanoImpact	2021
37283847	Preserved and variable spatial-chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade.	Plant Environ Interact	2021
33590907	Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) peak intensity normalization for complex mixture analyses.	Rapid Commun Mass Spectrom	2021
33577785	Proteogenomic and metabolomic characterization of human glioblastoma.	Cancer Cell	2021
34051754	Hypergraph models of biological networks to identify genes critical to pathogenic viral response.	BMC Bioinformatics	2021
33515546	Ceramide synthase 2 deletion decreases the infectivity of HIV-1.	J Biol Chem	2021
33661636	PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R.	J Proteome Res	2021
32929967	A Review of Imputation Strategies for Isobaric Labeling-Based Shotgun Proteomics.	J Proteome Res	2021
33124145	Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers.	J Diabetes	2021
33396843	From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions.	Biomolecules	2020
31911630	Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-Î¼m spatial resolution.	Nat Commun	2020
31742994	Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network.	Anal Chem	2020
31740441	Predictive Modeling of Type 1 Diabetes Stages Using Disparate Data Sources.	Diabetes	2020
32190784	Effects of ingested nanocellulose on intestinal microbiota and homeostasis in Wistar Han rats.	NanoImpact	2020
32176690	ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.	PLoS Comput Biol	2020
32694525	A global lipid map defines a network essential for Zika virus replication.	Nat Commun	2020
32966491	Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools.	Mol Omics	2020
32507289	Strong mineralogic control of soil organic matter composition in response to nutrient addition across diverse grassland sites.	Science of the Total Environment	2020
31320812	Extending Classification Algorithms to Case-Control Studies.	Biomed Eng Comput Biol	2019
31830917	Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis.	BMC Genomics	2019
31616667	The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.	Front Cell Dev Biol	2019
32095488	Indoor versus Outdoor Air Quality during Wildfires.	Environmental Science and Technology Letters	2019
30541282	A Probe-Enabled Approach for the Selective Isolation and Characterization of Functionally Active Subpopulations in the Gut Microbiome.	J Am Chem Soc	2019
30638385	pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.	J Proteome Res	2019