| 37381815 | A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data. | | 2023 |
| 36146896 | Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). | J Hered | 2023 |
| 36638792 | Loss of epigenetic information as a cause of mammalian aging. | Cell | 2023 |
| 37260085 | A method to generate capture baits for targeted sequencing. | | 2023 |
| 37198475 | Ancient gene linkages support ctenophores as sister to other animals. | | 2023 |
| 35137061 | Genome Sequencing of a Gray Wolf from Peninsular India Provides New Insights into the Evolution and Hybridization of Gray Wolves. | Genome Biology and Evolution | 2022 |
| 35711062 | A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears. | Nature Ecology and Evolution | 2022 |
| 36418910 | Modular automated microfluidic cell culture platform reduces glycolytic stress in cerebral cortex organoids. | Sci Rep | 2022 |
| 35108053 | Deeply conserved synteny and the evolution of metazoan chromosomes. | Science advances | 2022 |
| 34545398 | A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis. | G3: Genes, Genomes, Genetics | 2021 |
| 33911273 | Towards complete and error-free genome assemblies of all vertebrate species. | Nature | 2021 |
| 33574182 | Reintroduction of the archaic variant of <i>NOVA1</i> in cortical organoids alters neurodevelopment. | Science | 2021 |
| 34272242 | An ancestral recombination graph of human, Neanderthal, and Denisovan genomes. | Science advances | 2021 |
| 33882130 | An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus. | Journal of Heredity | 2021 |
| 33768239 | A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA. | Journal of Heredity | 2021 |
| 33438035 | A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus. | Journal of Heredity | 2021 |
| 33595645 | A Reference Genome Assembly of American Bison, Bison bison bison. | Journal of Heredity | 2021 |
| 34436588 | Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus. | Journal of Heredity | 2021 |
| 33335035 | Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility. | Science | 2020 |
| 32313176 | Deeply conserved synteny resolves early events in vertebrate evolution. | Nat Ecol Evol | 2020 |
| 32242610 | Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle. | Gigascience | 2020 |
| 32112100 | A novel NGS library preparation method to characterize native termini of fragmented DNA. | Nucleic Acids Research | 2020 |
| 31821505 | A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae. | Genome Biology and Evolution | 2020 |
| 32491177 | One fly-one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster. | Nucleic Acids Research | 2020 |
| 32686750 | Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. | Nat Biotechnol | 2020 |
| 31531403 | Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition. | Commun Biol | 2019 |
| 31628318 | Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. | Nature Communications | 2019 |
| 31881841 | A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos. | BMC Genomics | 2019 |
| 31754100 | Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. | Nature Communications | 2019 |
| 30605765 | Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue. | J Mol Diagn | 2019 |
| 30485757 | New Approaches for Genome Assembly and Scaffolding. | Annual Review of Animal Biosciences | 2019 |
| 29797549 | Minimizing polymerase biases in metabarcoding. | Molecular Ecology Resources | 2018 |
| 30456315 | Improved reference genome for the domestic horse increases assembly contiguity and composition. | Commun Biol | 2018 |
| 30072539 | Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia. | Science | 2018 |
| 30201725 | Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA. | Proc Natl Acad Sci U S A | 2018 |
| 29914971 | Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. | Genome Res | 2018 |
| 29471451 | Genomic Evidence of Widespread Admixture from Polar Bears into Brown Bears during the Last Ice Age. | Mol Biol Evol | 2018 |
| 29688543 | Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves. | Mol Biol Evol | 2018 |
| 28137821 | Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling. | Genome Res | 2017 |
| 28376731 | AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data. | BMC Bioinformatics | 2017 |
| 28667863 | A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures. | Forensic Sci Int Genet | 2017 |
| 28922420 | Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA. | PLoS ONE | 2017 |
| 29092041 | A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3.0). | Gigascience | 2017 |
| 29261166 | Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui. | Genes | 2017 |
| 29146814 | Natural selection shaped the rise and fall of passenger pigeon genomic diversity. | Science | 2017 |
| 27515363 | Erratum to "Impact of uncertainty in soil, climatic, and chemical information in a pesticide leaching assessment". | Journal of Contaminant Hydrology | 2016 |
| 26848124 | Chromosome-scale shotgun assembly using an in vitro method for long-range linkage. | Genome Res | 2016 |
| 27428749 | Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. | Nature Genetics | 2016 |
| 27325835 | Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data. | Philosophical Transactions of the Royal Society B: Biological Sciences | 2016 |
| 26826668 | Detecting hybridization using ancient DNA. | Molecular Ecology | 2016 |