Author details

Full Name

Justin T Reese

Affiliation

Lawrence Berkeley National Laboratory

ORCID

0000-0002-2170-2250

Career Start Year

1985

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37384147	Using knowledge graphs to infer gene expression in plants.	Front Artif Intell	2023
37389415	KG-Hub-building and exchanging biological knowledge graphs.	Bioinformatics	2023
35484572	SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing.	Genome Med	2022
35391505	Phenotype-driven approaches to enhance variant prioritization and diagnosis of rare disease.	Hum Mutat	2022
35524622	Risk of new-onset psychiatric sequelae of COVID-19 in the early and late post-acute phase.	World Psychiatry	2022
33196056	KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.	Patterns (N Y)	2021
32839776	KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response.	bioRxiv	2020
34812365	Explainable Machine Learning for Early Assessment of COVID-19 Risk Prediction in Emergency Departments.	IEEE Access	2020
32755546	Interpretable Clinical Genomics with a Likelihood Ratio Paradigm.	Am J Hum Genet	2020
27453819	Transcriptomic and functional resources for the small hive beetle Aethina tumida, a worldwide parasite of honey bees.	Genom Data	2016
26268606	Analysis of archived residual newborn screening blood spots after whole genome amplification.	BMC Genomics	2015
24479613	Finding the missing honey bee genes: lessons learned from a genome upgrade.	BMC Genomics	2014
24845553	Molecular traces of alternative social organization in a termite genome.	Nat Commun	2014
24511328	Characterization of the Asian Citrus Psyllid Transcriptome.	J Genomics	2014
24725768	BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity.	BMC Bioinformatics	2014
23636946	Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.	Genome Res	2013
24000942	Web Apollo: a web-based genomic annotation editing platform.	Genome Biol	2013
23166822	Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome.	PLoS One	2012
21123190	Bovine Genome Database: integrated tools for genome annotation and discovery.	Nucleic Acids Res	2011
21347285	The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.	PLoS Genet	2011
21282651	Draft genome of the red harvester ant Pogonomyrmex barbatus.	Proc Natl Acad Sci U S A	2011
21282631	Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).	Proc Natl Acad Sci U S A	2011
21071397	Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera.	Nucleic Acids Res	2011
20075255	Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.	Science	2010
21092105	Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.	BMC Genomics	2010
19390049	The genome sequence of taurine cattle: a window to ruminant biology and evolution.	Science	2009
18362917	The genome of the model beetle and pest Tribolium castaneum.	Nature	2008
17241472	Creating a honey bee consensus gene set.	Genome Biol	2007
17543122	Computational and transcriptional evidence for microRNAs in the honey bee genome.	Genome Biol	2007
17410502	Serum S100B levels in patients after cardiac surgery: possible sources of contamination.	Thorac Cardiovasc Surg	2007
17506851	Manual superscaffolding of honey bee (Apis mellifera) chromosomes 12-16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure.	Insect Mol Biol	2007
17065605	Community annotation: procedures, protocols, and supporting tools.	Genome Res	2006
17095691	The genome of the sea urchin Strongylocentrotus purpuratus.	Science	2006
15078218	What is the structure of the RecA-DNA filament?	Curr Protein Pept Sci	2004
15192094	Genome-wide analysis of ARS (autonomously replicating sequence) binding factor 1 (Abf1p)-mediated transcriptional regulation in Saccharomyces cerevisiae.	J Biol Chem	2004
12424122	Empirical determination of effective gap penalties for sequence comparison.	Bioinformatics	2002
11589307	Downregulated expression of Ly-6-ThB on developing T cells marks CD4+CD8+ subset undergoing selection in the thymus.	Dev Immunol	2001
10443518	Intraoperative embolus formation during cardiopulmonary bypass affects the release of S100B.	Thorac Cardiovasc Surg	1999
2784044	Left coronary ostial stenosis: comparison with left main coronary artery stenosis.	Ann Thorac Surg	1989
2865410	Twelve-year experience with internal mammary artery for coronary artery bypass.	J Thorac Cardiovasc Surg	1985
3964965	The role of resection margin frozen section in the surgical management of Crohn's disease.	Surg Gynecol Obstet	1985

1 - 41 of 41

Jan Baumbach

University of Hamburg

Career Start Year 2006

Number of shared co-authors 0

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 29

Scott J Emrich

The Pennsylvania State University College of Medicine

Career Start Year 2002

Number of shared co-authors 32

Pjotr Prins

Wageningen University & Research

Career Start Year 2001

Number of shared co-authors 4

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 10

Nicola Mulder

University of Cape Town

Career Start Year 1999

Number of shared co-authors 29

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 20

Vineet Bafna

University of California San Diego

Career Start Year 1998

Number of shared co-authors 15

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 0

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 1

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 8

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Career Start Year 1997

Number of shared co-authors 12

Ron Shamir

Tel Aviv University

Career Start Year 1995

Number of shared co-authors 2

Elizabeth A Worthey

Heersink School of Medicine, The University of Alabama at Birmingham

Career Start Year 1995

Number of shared co-authors 10

Bonnie Berger

Massachusetts Institute of Technology

Career Start Year 1994

Number of shared co-authors 7

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 19

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 18

Alejandro A Sch??ffer

National Cancer Institute, National Institutes of Health

Career Start Year 1993

Number of shared co-authors 5

Simon Kasif

Boston University

Career Start Year 1993

Number of shared co-authors 15

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Career Start Year 1992

Number of shared co-authors 100

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 5

Ewan Birney

European Bioinformatics Institute

Career Start Year 1992

Number of shared co-authors 111

Robert Gentleman

Center for Computational Biomedicine, Harvard Medical School

Career Start Year 1991

Number of shared co-authors 6

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 46

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 8

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 8

Gustavo Glusman

Institute for Systems Biology

Career Start Year 1988

Number of shared co-authors 29

Vincent Ferretti

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 8

Yves Moreau

KU Leuven - University of Leuven

Career Start Year 1967

Number of shared co-authors 5

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 85

row(s) 1 - 30 of 30

Christine G Elsik

University of Missouri

Co-authored papers 18

Monica C Munoz-Torres

University of Colorado Anschutz Medical Campus

Co-authored papers 12

Eran Elhaik

Lund University

Co-authored papers 9

Christopher P Childers

USDA-ARS

Co-authored papers 9

Dan Graur

University of Houston

Co-authored papers 9

Darren E Hagen

Oklahoma State University

Co-authored papers 7

Peter N Robinson

William Harvey Research Institute, Queen Mary University of London

Co-authored papers 7

Daniel Weaver

Beltsville Agricultural Research Center, USDA

Co-authored papers 6

Hugh M Robertson

University of Illinois at Champaign-Urbana

Co-authored papers 6

Richard A Gibbs

Baylor College of Medicine

Co-authored papers 6

George M Weinstock

The Genome Center at Washington University, Washington University School of Medicine

Co-authored papers 6

Kim C Worley

Baylor College of Medicine

Co-authored papers 6

Chris Tyler-Smith

Wellcome Sanger Institute

Co-authored papers 5

Jay D Evans

USDA-ARS Bee Research Laboratory

Co-authored papers 5

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 5

Donna M Muzny

Baylor College of Medicine

Co-authored papers 5

V V Solov'ev

Softberry Inc.

Co-authored papers 5

Kevin L Childs

Center for Genomics-Enabled Plant Science, Michigan State University

Co-authored papers 5

Lumi Viljakainen

Ecology and Genetics Research Unit, University of Oulu

Co-authored papers 5

Lan Zhang

Baylor College of Medicine

Co-authored papers 5

Christie L Kovar

Baylor College of Medicine

Co-authored papers 5

Olga Ermolaeva

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 4

Geoffrey Okwuonu

Baylor College of Medicine

Co-authored papers 4

J??rgen Gadau

Arizona State University

Co-authored papers 4

Evgenia V Kriventseva

University of Geneva Medical School

Co-authored papers 4

N V Mil'shina

Co-authored papers 4

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 4

Garret Suen

University of Wisconsin-Madison

Co-authored papers 4

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Co-authored papers 4

Lora R Lewis

Baylor College of Medicine

Co-authored papers 4

1 - 30

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