| 36778470 | BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations. | bioRxiv | 2023 |
| 37720019 | Whole-body modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease. | Res Sq | 2023 |
| 37095601 | A Mediterranean Diet Pattern Improves Intestinal Inflammation Concomitant with Reshaping of the Bacteriome in Ulcerative Colitis: A Randomised Controlled Trial. | J Crohns Colitis | 2023 |
| 36655399 | Association of Subjective and Objective Measures of Sleep With Gut Microbiota Composition and Diversity in Older Men: The Osteoporotic Fractures in Men Study. | J Gerontol A Biol Sci Med Sci | 2023 |
| 33978602 | Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. | Female Pelvic Med Reconstr Surg | 2022 |
| 35471119 | A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model. | Gut Microbes | 2022 |
| 35042975 | Correction to: Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | ISME J | 2022 |
| 35293792 | Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases. | mSystems | 2022 |
| 34166363 | Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. | PLoS Comput Biol | 2021 |
| 33512248 | A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | Biotechniques | 2021 |
| 33727399 | EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets. | mSystems | 2021 |
| 34589776 | Individuals with substance use disorders have a distinct oral microbiome pattern. | Brain Behav Immun Health | 2021 |
| 34079079 | Compositional and genetic alterations in Graves' disease gut microbiome reveal specific diagnostic biomarkers. | ISME J | 2021 |
| 34193290 | Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Microbiome | 2021 |
| 32343490 | QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data. | Curr Protoc Bioinformatics | 2020 |
| 33200135 | A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities. | bioRxiv | 2020 |
| 33144316 | Correction for Estaki et al., "Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2<sup>-/-</sup> Mice". | mSystems | 2020 |
| 33024049 | Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2<sup>-/-</sup> Mice. | mSystems | 2020 |
| 32398661 | Fish oil supplementation reduces maternal defensive inflammation and predicts a gut bacteriome with reduced immune priming capacity in infants. | ISME J | 2020 |
| 30545428 | Effects of Azithromycin on Behavior, Pathologic Signs, and Changes in Cytokines, Chemokines, and Neutrophil Migration in C57BL/6 Mice Exposed to Dextran Sulfate Sodium. | Comp Med | 2019 |
| 31399723 | Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Nat Biotechnol | 2019 |
| 31341288 | Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. | Nat Biotechnol | 2019 |
| 29844409 | Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison. | Sci Rep | 2018 |
| 28088610 | The effects of voluntary wheel running on neuroinflammatory status: Role of monocyte chemoattractant protein-1. | Mol Cell Neurosci | 2017 |
| 27502158 | Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions. | Microbiome | 2016 |
| 25531801 | North American ginseng protects against muscle damage and reduces neutrophil infiltration after an acute bout of downhill running in rats. | Appl Physiol Nutr Metab | 2015 |
| 25400448 | Interplay between intestinal alkaline phosphatase, diet, gut microbes and immunity. | World J Gastroenterol | 2014 |
| 23527249 | High-intensity endurance training results in faster vessel-specific rate of vasorelaxation in type 1 diabetic rats. | PLoS One | 2013 |
| 23405155 | Fish oil attenuates omega-6 polyunsaturated fatty acid-induced dysbiosis and infectious colitis but impairs LPS dephosphorylation activity causing sepsis. | PLoS One | 2013 |
| 24217034 | Clinical consequences of diet-induced dysbiosis. | Ann Nutr Metab | 2013 |