Author details

Full Name

Michael Shales

Affiliation

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

ORCID

Career Start Year

1980

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
33303586	Genetic interaction mapping informs integrative structure determination of protein complexes.	Science	2020
32084337	A Quantitative Genetic Interaction Map of HIV Infection.	Mol Cell	2020
30547882	Genetic analysis reveals functions of atypical polyubiquitin chains.	Elife	2018
30077634	Quantitative Yeast Genetic Interaction Profiling of Bacterial Effector Proteins Uncovers a Role for the Human Retromer in Salmonella Infection.	Cell Syst	2018
30118682	An Mtb-Human Protein-Protein Interaction Map Identifies a Switch between Host Antiviral and Antibacterial Responses.	Mol Cell	2018
28446597	The histone variant H2A.Z promotes splicing of weak introns.	Genes Dev	2017
28481362	Genetic interaction mapping in mammalian cells using CRISPR interference.	Nat Methods	2017
25544563	Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes.	Mol Cell	2015
26651948	Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.	Cell Host Microbe	2015
26118995	Global Mapping of the Inc-Human Interactome Reveals that Retromer Restricts Chlamydia Infection.	Cell Host Microbe	2015
25888283	Differential genetic interactions of yeast stress response MAPK pathways.	Mol Syst Biol	2015
25825871	Genetic interaction mapping reveals a role for the SWI/SNF nucleosome remodeler in spliceosome activation in fission yeast.	PLoS Genet	2015
25501949	Linking tumor mutations to drug responses via a quantitative chemical-genetic interaction map.	Cancer Discov	2015
24842270	Genetic interaction analysis of point mutations enables interrogation of gene function at a residue-level resolution: exploring the applications of high-resolution genetic interaction mapping of point mutations.	Bioessays	2014
25302077	Evolutionarily conserved genetic interactions with budding and fission yeast MutS identify orthologous relationships in mismatch repair-deficient cancer cells.	Genome Med	2014
25010907	Quantitative analysis of triple-mutant genetic interactions.	Nat Protoc	2014
23407553	Quantitative genetic-interaction mapping in mammalian cells.	Nat Methods	2013
24360963	Chemical genetics of rapamycin-insensitive TORC2 in S. cerevisiae.	Cell Rep	2013
23891562	A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress.	Mol Cell	2013
23932120	From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.	Cell	2013
23746449	Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation.	Cell Rep	2013
22681890	Hierarchical modularity and the evolution of genetic interactomes across species.	Mol Cell	2012
21185072	Phenotypic landscape of a bacterial cell.	Cell	2011
22190034	Global landscape of HIV-human protein complexes.	Nature	2011
20526336	A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking.	Nat Struct Mol Biol	2010
21127252	Rewiring of genetic networks in response to DNA damage.	Science	2010
20959818	Epistatic relationships reveal the functional organization of yeast transcription factors.	Mol Syst Biol	2010
20952395	Individual lysine acetylations on the N terminus of Saccharomyces cerevisiae H2A.Z are highly but not differentially regulated.	J Biol Chem	2010
19269370	Functional organization of the S. cerevisiae phosphorylation network.	Cell	2009
19470761	An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics.	Mol Cell Biol	2009
19176519	A complex-based reconstruction of the Saccharomyces cerevisiae interactome.	Mol Cell Proteomics	2009
19061648	A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing.	Mol Cell	2008
19160513	High-throughput, quantitative analyses of genetic interactions in E. coli.	Nat Methods	2008
18818364	Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.	Science	2008
17314980	Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.	Nature	2007
16554755	Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.	Nature	2006
12358429	Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTD.	RNA	2002
8710503	Characterization of the interaction between the acidic activation domain of VP16 and the RNA polymerase II initiation factor TFIIB.	Nucleic Acids Res	1996
1646402	Reduced binding of TFIID to transcriptionally compromised mutants of VP16.	Nature	1991
3896517	Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases.	Cell	1985
6326108	Identification, molecular cloning, and mutagenesis of Saccharomyces cerevisiae RNA polymerase genes.	Proc Natl Acad Sci U S A	1984
6135505	Daunorubicin-resistant Chinese hamster ovary cells expressing multidrug resistance and a cell-surface P-glycoprotein.	Cancer Res	1983
14582161	DNA-mediated transfer of an RNA polymerase II gene: reversion of the temperature-sensitive hamster cell cycle mutant TsAF8 by mammalian DNA.	Mol Cell Biol	1982
7462338	Defective RNA polymerase II in the G1 specific temperature sensitive hamster cell mutant TsAF8.	J Cell Physiol	1980

1 - 44 of 44

Matthew Jessulat

University of Regina

Career Start Year 2006

Number of shared co-authors 14

Ajay A Vashisht

David Geffen School of Medicine, University of California los angeles

Career Start Year 2005

Number of shared co-authors 10

Christopher C Ebmeier

University of Colorado

Career Start Year 2004

Number of shared co-authors 6

Mohan Babu

University of Regina

Career Start Year 2004

Number of shared co-authors 24

Zhijian Li

University of Toronto

Career Start Year 2002

Number of shared co-authors 15

Stephen Watt

Wellcome Sanger Institute

Career Start Year 1999

Number of shared co-authors 8

Amy Hin Yan Tong

University of Toronto

Career Start Year 1999

Number of shared co-authors 23

Peter H Thorpe

Queen Mary University

Career Start Year 1997

Number of shared co-authors 2

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Career Start Year 1997

Number of shared co-authors 21

Bernhard Suter

Baylor College of Medicine

Career Start Year 1997

Number of shared co-authors 15

Patrice Menard

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark

Career Start Year 1996

Number of shared co-authors 10

James A Wohlschlegel

David Geffen School of Medicine, University of California Los Angeles

Career Start Year 1996

Number of shared co-authors 7

Minkyu Kim

University of California san francisco

Career Start Year 1995

Number of shared co-authors 32

Kristin Baetz

Ottawa Institute of Systems Biology, University of Ottawa, University of Calgary

Career Start Year 1994

Number of shared co-authors 14

Robert J D Reid

Columbia University Vagelos College of Physicians & Surgeons

Career Start Year 1994

Number of shared co-authors 3

J??rg B??hler

University College London

Career Start Year 1991

Number of shared co-authors 13

Marc Vidal

Blavatnik Institute, Harvard Medical School

Career Start Year 1989

Number of shared co-authors 19

Stephen Buratowski

Harvard Medical School

Career Start Year 1988

Number of shared co-authors 37

John D Aitchison

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Career Start Year 1988

Number of shared co-authors 8

Hiten D Madhani

University of California san francisco

Career Start Year 1986

Number of shared co-authors 24

Mike Tyers

Institute for Research in Immunology and Cancer (IRIC), Universite de Montreal

Career Start Year 1986

Number of shared co-authors 17

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 11

Monika Tsai-Pflugfelder

Friedrich Miescher Institute for Biomedical Research

Career Start Year 1984

Number of shared co-authors 5

Hediye Erdjument-Bromage

Neuroscience Institute, NYU Grossman School of Medicine

Career Start Year 1984

Number of shared co-authors 12

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 22

Pamela A Silver

Harvard Medical School

Career Start Year 1979

Number of shared co-authors 6

Jasper Rine

University of California berkeley

Career Start Year 1977

Number of shared co-authors 12

Norma Neff

Stanford University

Career Start Year 1974

Number of shared co-authors 8

David Botstein

Calico Life Sciences LLC

Career Start Year 1968

Number of shared co-authors 9

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 16

row(s) 1 - 30 of 30

Nevan J Krogan (CM4AI)

University of California San Francisco

Co-authored papers 36

Hannes Braberg

University of California San Francisco

Co-authored papers 12

Candido J Ingles

Miguel Hernandez University of Elche.

Co-authored papers 9

Sean R Collins

University of California davis

Co-authored papers 8

Gerard Cagney

Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin

Co-authored papers 8

Assen Roguev

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Co-authored papers 8

Jeffrey R Johnson

Gladstone Institutes

Co-authored papers 8

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 7

Kevan M Shokat

University of California San Francisco

Co-authored papers 7

Christine Guthrie

University of California san francisco

Co-authored papers 6

Colm J Ryan

University College Dublin

Co-authored papers 6

Jonathan S Weissman

Whitehead Institute for Biomedical Research

Co-authored papers 6

Gwendolyn M Jang

Gladstone Institute of Data Science and Biotechnology, J. David Gladstone Institutes

Co-authored papers 6

Dorothea Fiedler

Leibniz Forschungsinstitut fur Molekulare Pharmakologie (FMP)

Co-authored papers 5

Michael-Christopher Keogh

EpiCypher Inc.

Co-authored papers 5

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 5

Tasha Johnson

Quantitative Biosciences Institute (QBI), University of California san francisco

Co-authored papers 5

Jack F Greenblatt

College Street, University of Toronto

Co-authored papers 5

Sourav Bandyopadhyay

University of California San Francisco

Co-authored papers 5

Stefanie J??ger

Institute of Molecular Biosciences, Goethe University Frankfurt

Co-authored papers 4

Kristin L Patrick

Texas A&M University School of Medicine

Co-authored papers 4

Frank C P Holstege

Princess Maxima Center for Pediatric Oncology

Co-authored papers 4

Andrew Emili

Boston University School of Medicine, Boston University

Co-authored papers 4

Erik Verschueren

University of California San Francisco

Co-authored papers 4

Monika Mehta

Albert Einstein College of Medicine

Co-authored papers 3

James E Haber

Brandeis University

Co-authored papers 3

David E Gordon

Emory University

Co-authored papers 3

Carol A Gross

University of California san francisco

Co-authored papers 3

Kathleen E Franks-Skiba

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Co-authored papers 3

Shuyi Wang

Fudan University

Co-authored papers 3

1 - 30

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