Skip to Main Content

Author Details

Kim-Anh L?? Cao
University of Melbourne
2007
112
37
PMIDPaper TitleJournal TitlePublished Year
36308696Multivariate Analysis with the R Package mixOmics.Methods Mol Biol2023
37819094Erratum for Ricci et al., "Host Traits and Phylogeny Contribute to Shaping Coral-Bacterial Symbioses".mSystems2023
37292200IL11 activates the placental inflammasome to drive preeclampsia.Front Immunol2023
37043275Protocol for a nested case-control study design for omics investigations in the Environmental Determinants of Islet Autoimmunity cohort.Ann Med2023
36653900PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data.Brief Bioinform2023
34554215timeOmics: an R package for longitudinal multi-omics data integration.Bioinformatics2022
37522759Metaphor-A workflow for streamlined assembly and binning of metagenomes.Gigascience2022
35830875Statistical challenges in longitudinal microbiome data analysis.Brief Bioinform2022
35362513Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references.Brief Bioinform2022
36313541Microbiota DNA isolation, 16S rRNA amplicon sequencing, and bioinformatic analysis for bacterial microbiome profiling of rodent fecal samples.STAR Protoc2022
36278483Randomized phase I trial of antigen-specific tolerizing immunotherapy with peptide/calcitriol liposomes in ACPA+ rheumatoid arthritis.JCI Insight2022
36035436Faecal microbiota transplant ameliorates gut dysbiosis and cognitive deficits in Huntington's disease mice.Brain Commun2022
35253476Host Traits and Phylogeny Contribute to Shaping Coral-Bacterial Symbioses.mSystems2022
34883510Interpretation of network-based integration from multi-omics longitudinal data.Nucleic Acids Res2022
35262396Alterations in the Gut Fungal Community in a Mouse Model of Huntington's Disease.Microbiol Spectr2022
33397732<i>Streptococcus</i> species enriched in the oral cavity of patients with RA are a source of peptidoglycan-polysaccharide polymers that can induce arthritis in mice.Ann Rheum Dis2021
35059604Gene-environment-gut interactions in Huntington's disease mice are associated with environmental modulation of the gut microbiome.iScience2021
34467946Time-course analysis of metabolomic and microbial responses in anaerobic digesters exposed to ammonia.Chemosphere2021
34433496Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
34353350Community-wide hackathons to identify central themes in single-cell multi-omics.Genome Biol2021
33989517An integrated analysis of human myeloid cells identifies gaps in in vitro models of in vivo biology.Stem Cell Reports2021
34151446How does the early life environment influence the oral microbiome and determine oral health outcomes in childhood?Bioessays2021
34036326A multi-modal data harmonisation approach for discovery of COVID-19 drug targets.Brief Bioinform2021
33249136An integrated metagenomics and metabolomics approach implicates the microbiota-gut-brain axis in the pathogenesis of Huntington's disease.Neurobiol Dis2021
30194046Microbiome profiling reveals gut dysbiosis in a transgenic mouse model of Huntington's disease.Neurobiol Dis2020
33575602Model-based joint visualization of multiple compositional omics datasets.NAR Genom Bioinform2020
31776547Managing batch effects in microbiome data.Brief Bioinform2020
31662129Taxonomic and functional assessment using metatranscriptomics reveals the effect of Angus cattle on rumen microbial signatures.Animal2020
31733171Multiple interaction nodes define the postreplication repair response to UV-induced DNA damage that is defective in melanomas and correlated with UV signature mutation load.Mol Oncol2020
33329547Multi-Omic Data Integration Allows Baseline Immune Signatures to Predict Hepatitis B Vaccine Response in a Small Cohort.Front Immunol2020
32606474Biomarker development for axial spondyloarthritis.Nat Rev Rheumatol2020
32804949Epistatic interactions between killer immunoglobulin-like receptors and human leukocyte antigen ligands are associated with ankylosing spondylitis.PLoS Genet2020
32771938Integrating independent microbial studies to build predictive models of anaerobic digestion inhibition by ammonia and phenol.Bioresour Technol2020
32986694A simple, scalable approach to building a cross-platform transcriptome atlas.PLoS Comput Biol2020
32864973Integrative Analyses to Investigate the Link between Microbial Activity and Metabolite Degradation during Anaerobic Digestion.J Proteome Res2020
32162785Altered Repertoire Diversity and Disease-Associated Clonal Expansions Revealed by T Cell Receptor Immunosequencing in Ankylosing Spondylitis Patients.Arthritis Rheumatol2020
30556344An improved clinical model to predict stimulated C-peptide in children with recent-onset type 1 diabetes.Pediatr Diabetes2019
31874981Temporal development of the oral microbiome and prediction of early childhood caries.Sci Rep2019
31803221A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types.Front Genet2019
31462648Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years.Sci Rep2019
30809715Exploring the association between BMI and mortality in Australian women and men with and without diabetes: the AusDiab study.Diabetologia2019
31022528Genome-resolved metagenomics of an autotrophic thiocyanate-remediating microbial bioreactor consortium.Water Res2019
31133762Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments.Nat Methods2019
30657866DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays.Bioinformatics2019
30269428Pathway dysregulation analysis of the nucleotide excision repair mechanisms reveals it is not a common feature of melanomas.Pigment Cell Melanoma Res2019
30700427IL-23 favours outgrowth of spondyloarthritis-associated pathobionts and suppresses host support for homeostatic microbiota.Ann Rheum Dis2019
29108111Genetic Variants in ERAP1 and ERAP2 Associated With Immune-Mediated Diseases Influence Protein Expression and the Isoform Profile.Arthritis Rheumatol2018
30100563Intestinal Metaproteomics Reveals Host-Microbiota Interactions in Subjects at Risk for Type 1 Diabetes.Diabetes Care2018
30097534Evaluation of Serum Glycoprotein Biomarker Candidates for Detection of Esophageal Adenocarcinoma and Surveillance of Barrett's Esophagus.Mol Cell Proteomics2018
30301852A Natural History of Actinic Keratosis and Cutaneous Squamous Cell Carcinoma Microbiomes.mBio2018
  • 1 - 50 of 112

Recommended Authors

Michael Altenbuchinger
University Medical Center Gottingen
Career Start Year 2017
Number of shared co-authors 0
Mickael Leclercq
CHU de Quebec-Laval University Research Center
Career Start Year 2012
Number of shared co-authors 1
George I Mias
Michigan State University
Career Start Year 2012
Number of shared co-authors 0
David Gomez-Cabrero
King Abdullah University of Science and Technology
Career Start Year 2010
Number of shared co-authors 3
Bertrand De Meulder
European Institute for Systems Biology and Medicine, CNRS-ENS-UCBL-INSERM
Career Start Year 2010
Number of shared co-authors 0
H??ctor Corrada Bravo
University of Maryland College Park, College Park
Career Start Year 2009
Number of shared co-authors 8
Jaeyun Sung
Mayo Clinic
Career Start Year 2009
Number of shared co-authors 0
Levi Waldron
City University of New York School of Public Health
Career Start Year 2009
Number of shared co-authors 10
Robert M Flight
University of Kentucky
Career Start Year 2007
Number of shared co-authors 0
Timothy L Tickle
Broad Institute
Career Start Year 2007
Number of shared co-authors 3
Jan Baumbach
University of Hamburg
Career Start Year 2006
Number of shared co-authors 0
Joshua W K Ho
The University of Hong Kong
Career Start Year 2006
Number of shared co-authors 0
Jennifer Clarke
Department of Food Science and Technology, University of Nebraska-Lincoln
Career Start Year 2006
Number of shared co-authors 0
Marco Chierici
Fondazione Bruno Kessler
Career Start Year 2006
Number of shared co-authors 16
Nathalie Pochet
Broad Institute of MIT and Harvard
Career Start Year 2004
Number of shared co-authors 1
J??rg Rahnenf??hrer
TU Dortmund University
Career Start Year 2002
Number of shared co-authors 0
Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Career Start Year 2002
Number of shared co-authors 1
Purvesh Khatri
University of California San Francisco
Career Start Year 2002
Number of shared co-authors 1
Nathan D Price
Institute for Systems Biology
Career Start Year 2002
Number of shared co-authors 1
Mark A van de Wiel
Amsterdam University Medical Centers (Amsterdam UMC)
Career Start Year 2001
Number of shared co-authors 2
Jean Yee Hwa Yang
The University of Sydney
Career Start Year 2001
Number of shared co-authors 2
George C Tseng
University of Pittsburgh School of Public Health
Career Start Year 2001
Number of shared co-authors 0
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Career Start Year 2000
Number of shared co-authors 4
Hedi Peterson
Institute of Computer Science, University of Tartu
Career Start Year 2000
Number of shared co-authors 1
Cesare Furlanello
Bruno Kessler Foundation
Career Start Year 1996
Number of shared co-authors 18
Wolfgang Huber
Technische Universitat Munchen
Career Start Year 1995
Number of shared co-authors 7
Atul J Butte
Bakar Computational Health Sciences Institute, University of California san francisco
Career Start Year 1993
Number of shared co-authors 0
Fabian J Theis
Technical University of Munich
Career Start Year 1992
Number of shared co-authors 1
Bart De Moor
STADIUS Center for Dynamical Systems
Career Start Year 1990
Number of shared co-authors 1
Rainer Spang
University of Regensburg
Career Start Year 1969
Number of shared co-authors 0

Collaborators

Christine A Wells
The University of Melbourne
Co-authored papers 6
Matthew A Brown
Co-authored papers 5
Amrit Singh
St. Paul's Hospital, University of British Columbia
Co-authored papers 5
Tony J Kenna
Queensland University of Technology
Co-authored papers 3
Matthew E Ritchie
The University of Melbourne
Co-authored papers 3
Peter T Simpson
UQ Centre for Clinical Research, The University of Queensland
Co-authored papers 3
Arnaud Droit
Centre de Recherche du CHU de Quebec-Universite, Universite Laval
Co-authored papers 3
Sean M Grimmond
The University of Melbourne
Co-authored papers 3
Albert J R Heck
Utrecht University
Co-authored papers 2
Harris A Lewin
University of California Davis
Co-authored papers 2
Susan Holmes
Stanford University
Co-authored papers 2
Ruben Dries
Boston University School of Medicine
Co-authored papers 2
Genevieve L Stein-O'Brien
Johns Hopkins School of Medicine
Co-authored papers 2
Kris Sankaran
University of Wisconsin - Madison, 1300 University Ave
Co-authored papers 2
Aedin C Culhane
Dana-Farber Cancer Institute & Harvard School of Public Health
Co-authored papers 2
Arshi Arora
Memorial Sloan Kettering Cancer Center
Co-authored papers 2
Jessica C Mar
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 2
Dario Righelli
University of Padova
Co-authored papers 2
Vincent J Carey
Brigham and Women's Hospital, Harvard Medical School
Co-authored papers 2
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
Michael I Love
University of North Carolina at Chapel Hill
Co-authored papers 2
Peter W Zandstra
Co-authored papers 2
Ayshwarya Subramanian
Broad Institute of MIT and Harvard
Co-authored papers 2
Pratheepa Jeganathan
McMaster University
Co-authored papers 2
Joshua D Welch
University of Michigan ann arbor
Co-authored papers 2
Alexis Coullomb
INSERM
Co-authored papers 2
Melissa J Davis
Co-authored papers 2
Jong-Il Kim
Genomic Medicine Institute, Medical Research Center, Seoul National University
Co-authored papers 2
Ricard Argelaguet
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 2
Vera Pancaldi
Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier
Co-authored papers 2
Release 1.2