Author details

Full Name

Debashish Ray

Affiliation

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37002329	RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.	Sci Rep	2023
37704377	Uncovering a mammalian neural-specific poly(A) binding protein with unique properties.		2023
35476669	The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians.	PLoS Biol	2022
35914531	Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1.	Mol Cell	2022
36018788	PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.	Nucleic Acids Res	2022
32762776	The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation.	Genome Biol	2020
30698747	ARGLU1 is a transcriptional coactivator and splicing regulator important for stress hormone signaling and development.	Nucleic Acids Res	2019
30575518	The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in <i>C</i>. e<i>legans</i>.	Elife	2018
30141626	A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).	ACS Chem Biol	2018
28157508	Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors.	Mol Cell	2017
28379442	An RRM-ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion.	Nucleic Acids Res	2017
28651966	RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection.	Methods	2017
28697339	Oncogenic Activation of the RNA Binding Protein NELFE and MYC Signaling in Hepatocellular Carcinoma.	Cancer Cell	2017
27956239	RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins.	Methods	2017
27502555	Conserved functional antagonism of CELF and MBNL proteins controls stem cell-specific alternative splicing in planarians.	Elife	2016
26527002	The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.	Cell Rep	2015
25962635	Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.	Genome Biol	2015
24663241	Identifying mRNA sequence elements for target recognition by human Argonaute proteins.	Genome Res	2014
24550280	Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes.	Proc Natl Acad Sci U S A	2014
24910101	A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types.	Mol Cell	2014
24244709	Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints.	PLoS One	2013
23846655	A compendium of RNA-binding motifs for decoding gene regulation.	Nature	2013
21884984	Cross-regulation between an alternative splicing activator and a transcription repressor controls neurogenesis.	Mol Cell	2011
21149258	Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays.	Nucleic Acids Res	2011
20617199	RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.	PLoS Comput Biol	2010
19561594	Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.	Nat Biotechnol	2009
17301144	Distinct RNA elements confer specificity to flavivirus RNA cap methylation events.	J Virol	2007
17267492	Structure and function of flavivirus NS5 methyltransferase.	J Virol	2007
18221133	Recent advances in flavivirus antiviral drug discovery and vaccine development.	Recent Pat Antiinfect Drug Discov	2006
16912287	West Nile virus 5'-cap structure is formed by sequential guanine N-7 and ribose 2'-O methylations by nonstructural protein 5.	J Virol	2006
15795270	The p92 polymerase coding region contains an internal RNA element required at an early step in Tombusvirus genome replication.	Journal of Virology	2005
15367615	Structural properties of a multifunctional T-shaped RNA domain that mediate efficient tomato bushy stunt virus RNA replication.	Journal of Virology	2004
12954222	3'-Terminal RNA secondary structures are important for accumulation of tomato bushy stunt virus DI RNAs.	Virology	2003
13130137	A second functional RNA domain in the 5' UTR of the Tomato bushy stunt virus genome: intra- and interdomain interactions mediate viral RNA replication.	RNA	2003
12477830	An internally located RNA hairpin enhances replication of Tomato bushy stunt virus RNAs.	Journal of Virology	2003
10087236	Enhancer-like properties of an RNA element that modulates Tombusvirus RNA accumulation.	Virology	1999