Author details

Full Name

Rezarta Islamaj DoÄ¿an

Affiliation

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36227127	Assigning species information to corresponding genes by a sequence labeling framework.	Database (Oxford)	2022
33839304	NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition.	J Biomed Inform	2021
32383756	TeamTat: a collaborative text annotation tool.	Nucleic Acids Res	2020
30715220	PMC text mining subset in BioC: about three million full-text articles and growing.	Bioinformatics	2019
30689846	Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.	Database (Oxford)	2019
28077563	The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.	Database (Oxford)	2017
27589962	BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.	Database (Oxford)	2016
27504010	Crowdsourcing and curation: perspectives from biology and natural language processing.	Database (Oxford)	2016
24961236	BioC implementations in Go, Perl, Python and Ruby.	Database (Oxford)	2014
28758138	Author Name Disambiguation for PubMed.	J Assoc Inf Sci Technol	2014
24393765	NCBI disease corpus: a resource for disease name recognition and concept normalization.	J Biomed Inform	2014
24914232	Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora.	Database (Oxford)	2014
24980129	BioC interoperability track overview.	Database (Oxford)	2014
24935050	Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus.	Database (Oxford)	2014
24048470	BioC: a minimalist approach to interoperability for biomedical text processing.	Database (Oxford)	2013
23969135	DNorm: disease name normalization with pairwise learning to rank.	Bioinformatics	2013
23046748	Topics in machine learning for biomedical literature analysis and text retrieval.	Journal of Biomedical Semantics	2012
22508909	An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2012
22151929	The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.	BMC Bioinformatics	2011
21094696	Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction.	J Biomed Inform	2011
21658290	A context-blocks model for identifying clinical relationships in patient records.	BMC Bioinformatics	2011
21658287	Topics in machine learning for biomedical literature analysis and text retrieval.	BMC Bioinformatics	2011
21552455	A textual representation scheme for identifying clinical relationships in patient records.	Proc Int Conf Mach Learn Appl	2011
20819859	Extracting Rx information from clinical narrative.	J Am Med Inform Assoc	2010
20810602	Click-words: learning to predict document keywords from a user perspective.	Bioinformatics	2010
21347036	Author keywords in biomedical journal articles.	AMIA Annu Symp Proc	2010
20157491	Understanding PubMed user search behavior through log analysis.	Database (Oxford)	2009
17958908	Features generated for computational splice-site prediction correspond to functional elements.	BMC Bioinformatics	2007
17576680	SplicePort--an interactive splice-site analysis tool.	Nucleic Acids Res	2007
17688700	Structural footprinting in protein structure comparison: the impact of structural fragments.	BMC Struct Biol	2007