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Author Details

Vesteinn Thorsson
Institute for Systems Biology
1990
47
28
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36595917Analytic pipelines to assess the relationship between immune response and germline genetics in human tumors.STAR Protoc2022
35690832The immune landscape of solid pediatric tumors.J Exp Clin Cancer Res2022
34512714Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer.Front Genet2021
33567262Germline genetic contribution to the immune landscape of cancer.Immunity2021
31502174Multiplatform Integrative Analysis of Immunogenomic Data for Biomarker Discovery.Methods Mol Biol2020
33214875CRI iAtlas: an interactive portal for immuno-oncology research.F1000Res2020
33127656Society for Immunotherapy of Cancer clinical and biomarkers data sharing resource document: Volume I-conceptual challenges.J Immunother Cancer2020
33323463Society for Immunotherapy of Cancer clinical and biomarkers data sharing resource document: Volume II-practical challenges.J Immunother Cancer2020
30705290MITF has a central role in regulating starvation-induced autophagy in melanoma.Sci Rep2019
31272507Correction to: Toward a comprehensive view of cancer immune responsiveness: a synopsis from the SITC workshop.J Immunother Cancer2019
31433971The Immune Landscape of Cancer.Immunity2019
29622466Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas.Cancer Cell2018
29898407Integrated Molecular Characterization of Testicular Germ Cell Tumors.Cell Rep2018
30322867Integrative Molecular Characterization of Malignant Pleural Mesothelioma.Cancer Discov2018
29617659Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.Cell Rep2018
29625055An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.Cell2018
29625049Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.Cell2018
29625048Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer.Cell2018
28604732Meta-analysis of five genome-wide association studies identifies multiple new loci associated with testicular germ cell tumor.Nat Genet2017
28824725Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center.Theranostics2017
26095338Validation and calibration of next-generation sequencing to identify Epstein-Barr virus-positive gastric cancer in The Cancer Genome Atlas.Gastric Cancer2016
22952610Increasing coverage of transcription factor position weight matrices through domain-level homology.PLoS One2012
19348642A data integration framework for prediction of transcription factor targets.Ann N Y Acad Sci2009
18369420Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.PLoS Comput Biol2008
19057661Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles.PLoS Pathog2008
18321385The Innate Immune Database (IIDB).BMC Immunol2008
17389876Prediction of phenotype and gene expression for combinations of mutations.Mol Syst Biol2007
18160043A predictive model for transcriptional control of physiology in a free living cell.Cell2007
16686963The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.Genome Biol2006
16524838Transcriptional noise and cellular heterogeneity in mammalian macrophages.Philos Trans R Soc Lond B Biol Sci2006
16688168Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.Nature2006
15967031Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection.BMC Bioinformatics2005
16646846Reverse engineering galactose regulation in yeast through model selection.Stat Appl Genet Mol Biol2005
15833125Derivation of genetic interaction networks from quantitative phenotype data.Genome Biol2005
15238602Integrated genomic and proteomic analyses of gene expression in Mammalian cells.Mol Cell Proteomics2004
11928502Discovery of causal relationships in a gene-regulation pathway from a mixture of experimental and observational DNA microarray data.Pac Symp Biocomput2002
11340206Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.Science2001
11016950Genome sequence of Halobacterium species NRC-1.Proc Natl Acad Sci U S A2000
11382363Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data.J Comput Biol2000
10902179Discovery of regulatory interactions through perturbation: inference and experimental design.Pac Symp Biocomput2000
10899151Parking strategies for genome sequencing.Genome Res2000
10926500HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.J Mol Biol2000
10059942Kaon energies in dense matter.Phys Rev Lett1995
10019595Neutrino emission from dense matter containing meson condensates.Phys Rev D Part Fields1995
10055754Neutrino pair bremsstrahlung in neutron star crusts: A reappraisal.Phys Rev Lett1994
10014459Central nucleon-nucleon potential from Skyrmions.Phys Rev D Part Fields1992
10012282Diquarks in the Nambu-Jona-Lasinio model.Phys Rev D Part Fields1990
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Collaborators

Ilya Shmulevich
Institute for Systems Biology
Co-authored papers 9
Leroy Hood
Center for Phenomic Health, The Buck Institute for Research on Aging
Co-authored papers 7
Andrew D Cherniack
Dana-Farber Cancer Institute
Co-authored papers 7
Alexander J Lazar
The University of Texas MD Anderson Cancer Center
Co-authored papers 6
Reanne Bowlby
Co-authored papers 6
Denise M Wolf
University of California San Francisco
Co-authored papers 5
Rehan Akbani
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Katherine A Hoadley
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 5
Alan Aderem
Seattle Children's Research Institute
Co-authored papers 4
Justin Guinney
University of Washington
Co-authored papers 4
Elad Ziv
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Co-authored papers 4
Jared C Roach
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The University of Texas MD Anderson Cancer Center
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Davide Bedognetti
College of Health and Life Sciences, Hamad Bin Khalifa University, Qatar Foundation
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Co-authored papers 3
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University of California San Diego
Co-authored papers 3
Eduard Porta-Pardo
Josep Carreras Leukaemia Research Institute
Co-authored papers 3
Peter W Laird
Van Andel Institute
Co-authored papers 3
Charles S Rabkin
National Cancer Institute
Co-authored papers 3
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 3
Timothy Galitski
Institute for Systems Biology
Co-authored papers 3
Benjamin G Vincent
UNC School of Medicine, The University of North Carolina at Chapel Hill
Co-authored papers 3
Chandra Sekhar Pedamallu
Broad Institute
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Jean Claude Zenklusen
National Cancer Institute
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Farshad Farshidfar
Cumming School of Medicine, University of Calgary
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Nitin S Baliga
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Andrew F Siegel
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Release 1.2