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Author Details

Kathleen M Fisch
Center for Computational Biology and Bioinformatics, University of California
2009
73
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36991131Focal adhesion is associated with lithium response in bipolar disorder: evidence from a network-based multi-omics analysis.Mol Psychiatry2024
37971144Defining the relationship of salivary gland malignancies to novel cell subpopulations in human salivary glands using single nucleus RNA-sequencing.Int J Cancer2024
36991131Focal adhesion is associated with lithium response in bipolar disorder: evidence from a network-based multi-omics analysis.Mol Psychiatry2024
37971144Defining the relationship of salivary gland malignancies to novel cell subpopulations in human salivary glands using single nucleus RNA-sequencing.Int J Cancer2024
36059147Interleukin-18 signaling promotes activation of hepatic stellate cells in mouse liver fibrosis.Hepatology2023
35754343A Novel Hypomorphic Apex1 Mouse Model Implicates Apurinic/Apyrimidinic Endonuclease 1 in Oxidative DNA Damage Repair in Gastric Epithelial Cells.Antioxid Redox Signal2023
35560106Nonalcoholic fatty liver disease risk and histologic severity are associated with genetic polymorphisms in children.Hepatology2023
36333266Modeling placental development and disease using human pluripotent stem cells.Placenta2023
36059147Interleukin-18 signaling promotes activation of hepatic stellate cells in mouse liver fibrosis.Hepatology2023
38019934Resident microbes shape the vaginal epithelial glycan landscape.Sci Transl Med2023
36653526Mapping the common gene networks that underlie related diseases.Nat Protoc2023
37398458Malignant A-to-I RNA editing by ADAR1 drives T-cell acute lymphoblastic leukemia relapse via attenuating dsRNA sensing.Res Sq2023
36889320Detection and targeting of splicing deregulation in pediatric acute myeloid leukemia stem cells.Cell Rep Med2023
36762637Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development.Development2023
37326643Predicting chronic postsurgical pain: current evidence and a novel program to develop predictive biomarker signatures.Pain2023
37256972Variant <i>STAT4</i> and Response to Ruxolitinib in an Autoinflammatory Syndrome.N Engl J Med2023
37116753Maladaptive lymphangiogenesis is associated with synovial iron accumulation and delayed clearance in factor VIII-deficient mice after induced hemarthrosis.J Thromb Haemost2023
37228812Transcriptional time course after rotator cuff repair in 6 month old female rabbits.Front Physiol2023
38019934Resident microbes shape the vaginal epithelial glycan landscape.Sci Transl Med2023
35754343A Novel Hypomorphic Apex1 Mouse Model Implicates Apurinic/Apyrimidinic Endonuclease 1 in Oxidative DNA Damage Repair in Gastric Epithelial Cells.Antioxid Redox Signal2023
35560106Nonalcoholic fatty liver disease risk and histologic severity are associated with genetic polymorphisms in children.Hepatology2023
37326643Predicting chronic postsurgical pain: current evidence and a novel program to develop predictive biomarker signatures.Pain2023
37256972Variant <i>STAT4</i> and Response to Ruxolitinib in an Autoinflammatory Syndrome.N Engl J Med2023
37116753Maladaptive lymphangiogenesis is associated with synovial iron accumulation and delayed clearance in factor VIII-deficient mice after induced hemarthrosis.J Thromb Haemost2023
37398458Malignant A-to-I RNA editing by ADAR1 drives T-cell acute lymphoblastic leukemia relapse via attenuating dsRNA sensing.Res Sq2023
37228812Transcriptional time course after rotator cuff repair in 6 month old female rabbits.Front Physiol2023
36889320Detection and targeting of splicing deregulation in pediatric acute myeloid leukemia stem cells.Cell Rep Med2023
36653526Mapping the common gene networks that underlie related diseases.Nat Protoc2023
36762637Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development.Development2023
36333266Modeling placental development and disease using human pluripotent stem cells.Placenta2023
35115414Machine learning approach to predicting persistent opioid use following lower extremity joint arthroplasty.Reg Anesth Pain Med2022
35594858Derivation of functional trophoblast stem cells from primed human pluripotent stem cells.Stem Cell Reports2022
36359808Chromatin Accessibility and Transcriptional Differences in Human Stem Cell-Derived Early-Stage Retinal Organoids.Cells2022
35378331The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.Cell Mol Gastroenterol Hepatol2022
35871359Mutant Huntingtin Protein Interaction Map Implicates Dysregulation of Multiple Cellular Pathways in Neurodegeneration of Huntington's Disease.J Huntingtons Dis2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35547202Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol.Front Med (Lausanne)2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
36195913Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear.J Orthop Surg Res2022
35354612The Lung Microenvironment Instructs Gene Transcription in Neonatal and Adult Alveolar Macrophages.J Immunol2022
35332213The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction.Sci Rep2022
35115414Machine learning approach to predicting persistent opioid use following lower extremity joint arthroplasty.Reg Anesth Pain Med2022
35411350Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission.medRxiv2022
35547202Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol.Front Med (Lausanne)2022
35378331The Host-Microbiome Response to Hyperbaric Oxygen Therapy in Ulcerative Colitis Patients.Cell Mol Gastroenterol Hepatol2022
35798029Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.Nature2022
35594858Derivation of functional trophoblast stem cells from primed human pluripotent stem cells.Stem Cell Reports2022
35354612The Lung Microenvironment Instructs Gene Transcription in Neonatal and Adult Alveolar Macrophages.J Immunol2022
35871359Mutant Huntingtin Protein Interaction Map Implicates Dysregulation of Multiple Cellular Pathways in Neurodegeneration of Huntington's Disease.J Huntingtons Dis2022
36359808Chromatin Accessibility and Transcriptional Differences in Human Stem Cell-Derived Early-Stage Retinal Organoids.Cells2022
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Collaborators

Sara Brin Rosenthal
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 12
Guorong Xu
Chinese University of Hong Kong
Co-authored papers 10
Shuling Ren
Beijing Friendship Hospital, Capital Medical University
Co-authored papers 8
Amanda Birmingham
Center for Computational Biology & Bioinformatics , University of California
Co-authored papers 8
Joseph A Califano
University of California
Co-authored papers 8
Theresa Guo
Moores Cancer Center, University of California
Co-authored papers 7
Samuel R Ward
Co-authored papers 7
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 7
Andrew I Su
The Scripps Research Institute
Co-authored papers 7
Akihiro Sakai
Tokai University
Co-authored papers 6
Mizuo Ando
University of Tokyo
Co-authored papers 6
Kristen Jepsen
Institute for Genomic Medicine, University of California San Diego
Co-authored papers 6
Takahito Fukusumi
Osaka University Graduate School of Medicine
Co-authored papers 6
Chao Liu
Xiangya Hospital, Central South University
Co-authored papers 6
Roman Sasik
Center for Computational Biology & Bioinformatics (CCBB), University of California
Co-authored papers 6
John Pang
University of Washington
Co-authored papers 5
Sayed Sadat
Moores Cancer Center, University of California San Diego
Co-authored papers 5
Gene W Yeo
University of California
Co-authored papers 5
Yuki Saito
Niigata Prefectural Tokamachi Hospital.
Co-authored papers 4
Aaron N Chang
Baylor College of Medicine
Co-authored papers 4
Adam Mark
Center for Computational Biology & Bioinformatics (CCBB), University of California
Co-authored papers 4
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 4
Pablo Tamayo
University of California San Diego
Co-authored papers 3
Jessica Pham
Sanford Stem Cell Institute, University of California
Co-authored papers 3
Zubair Khan
University of Texas at Houston Health Science Center
Co-authored papers 3
Daria A Gaykalova
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 3
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 3
John T Chang
University of California San Diego
Co-authored papers 3
David Dimmock
Rady Children's Institute for Genomic Medicine
Co-authored papers 3
Sunny Haft
Moores Cancer Center, University of California
Co-authored papers 3
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