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Author Details

Yingtao Bi
Foundational Immunology, AbbVie Cambridge Research Center
2011
29
18
PMIDPaper TitleJournal TitlePublished Year
36372810Epithelial dysfunction is prevented by IL-22 treatment in a Citrobacter rodentium-induced colitis model that shares similarities with inflammatory bowel disease.Mucosal Immunol2022
33469060A comparative study of evaluating missing value imputation methods in label-free proteomics.Sci Rep2021
33903225RP58 Represses Transcriptional Programs Linked to Nonneuronal Cell Identity and Glioblastoma Subtypes in Developing Neurons.Mol Cell Biol2021
33473123Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates.Nat Commun2021
33349700A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples.Nat Biotechnol2021
31173627Integrative Analysis of Transcriptomic and Proteomic Profiling in Inflammatory Bowel Disease Colon Biopsies.Inflamm Bowel Dis2019
31815646Immune landscapes associated with different glioblastoma molecular subtypes.Acta Neuropathol Commun2019
29326975Identifying the substrate proteins of U-box E3s E4B and CHIP by orthogonal ubiquitin transfer.Sci Adv2018
30342483Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth.BMC Genet2018
29568390Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors.Oncotarget2018
26944083Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms.Brief Bioinform2017
28134249Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes.Nat Commun2017
28249000Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model.PLoS One2017
28096648Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis.Cancer Inform2017
29263404Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer.Nat Commun2017
28564604Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation.Cell Rep2017
26188015Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.Neuro Oncol2016
27364770MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma.Mol Cancer Res2016
25355877Shift in monocyte apoptosis with increasing viral load and change in apoptosis-related ISG/Bcl2 family gene expression in chronically HIV-1-infected subjects.J Virol2015
26576613Evaluation of data discretization methods to derive platform independent isoform expression signatures for multi-class tumor subtyping.BMC Genomics2015
26041838Correction for Patro et al., Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects.J Virol2015
25934697Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma.Mol Cancer Res2015
24503249Isoform-level gene signature improves prognostic stratification and accurately classifies glioblastoma subtypes.Nucleic Acids Res2014
23594586Isoform level expression profiles provide better cancer signatures than gene level expression profiles.Genome Med2013
24074532Fibroblast activation protein expression by stromal cells and tumor-associated macrophages in human breast cancer.Hum Pathol2013
23826213Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia.PLoS One2013
23981227NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data.BMC Bioinformatics2013
21912677Tree-based position weight matrix approach to model transcription factor binding site profiles.PLoS One2011
21794104IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data.BMC Bioinformatics2011
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Collaborators

Ramana V Davuluri
The Wistar Institute
Co-authored papers 21
Sharmistha Pal
Co-authored papers 6
Donald M O'Rourke
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Co-authored papers 4
Maria Martinez-Lage
Massachusetts General Hospital
Co-authored papers 3
Nadia Dahmane
Weill Cornell Medical College
Co-authored papers 3
Charles D James
Co-authored papers 2
Luis J Montaner
Wistar Institute
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Karam Mounzer
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Tadanori Tomita
Co-authored papers 2
Craig Horbinski
Co-authored papers 2
Luke Macyszyn
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 2
Manoj Kandpal
Center for Clinical and Translational Science, Rockefeller University
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Gregory P Way
Broad Institute of MIT and Harvard
Co-authored papers 1
Valérie Baubet
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Louise C Showe
The Wistar Institute
Co-authored papers 1
Matthew Dapas
University of Chicago
Co-authored papers 1
Jeffrey P Greenfield
Weill Cornell Medical Center, NewYork Presbyterian Hospital
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Charles Wang
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Carl H June
University of Pennsylvania Department of Pathology & Laboratory Medicine
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Gurpreet S Kapoor
Collegeville
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Josephine Haller
University of Pennsylvania School of Medicine
Co-authored papers 1
Mareike Simon
Abramson Family Cancer Research Institute, Perelman School of Medicine
Co-authored papers 1
Amy Ziober
Hospital of the University of Pennsylvania
Co-authored papers 1
Stewart Goldman
Co-authored papers 1
Shi-Yuan Cheng
Northwestern University Feinberg School of Medicine
Co-authored papers 1
Maureen Kachman
Co-authored papers 1
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Jared M Pisapia
Co-authored papers 1
Charles F Burant
Co-authored papers 1
Rachel E Yan
Weill Cornell College of Medicine
Co-authored papers 1
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