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| 36350631 | Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRDÂ and ViPR. | Nucleic Acids Res | 2023 |
| 34774517 | Delta Variants of SARS-CoV-2 Cause Significantly Increased Vaccine Breakthrough COVID-19 Cases in Houston, Texas. | Am J Pathol | 2022 |
| 35123975 | Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas. | Am J Pathol | 2022 |
| 34303698 | Trajectory of Growth of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants in Houston, Texas, January through May 2021, Based on 12,476 Genome Sequences. | Am J Pathol | 2021 |
| 33741335 | Sequence Analysis of 20,453 Severe Acute Respiratory Syndrome Coronavirus 2 Genomes from the Houston Metropolitan Area Identifies the Emergence and Widespread Distribution of Multiple Isolates of All Major Variants of Concern. | Am J Pathol | 2021 |
| 34878296 | Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein. | Microbiol Spectr | 2021 |
| 34379107 | A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. | Brief Bioinform | 2021 |
| 33075053 | Predicting antimicrobial resistance using conserved genes. | PLoS Comput Biol | 2020 |
| 31667520 | The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. | Nucleic Acids Res | 2020 |
| 28968762 | PATRIC as a unique resource for studying antimicrobial resistance. | Brief Bioinform | 2019 |
| 31581946 | A machine learning-based service for estimating quality of genomes using PATRIC. | BMC Bioinformatics | 2019 |
| 30333126 | Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal <i>Salmonella</i>. | J Clin Microbiol | 2019 |
| 29323230 | Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae. | Sci Rep | 2018 |
| 29979655 | KBase: The United States Department of Energy Systems Biology Knowledgebase. | Nat Biotechnol | 2018 |
| 29277864 | Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center. | Methods Mol Biol | 2018 |
| 27899627 | Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. | Nucleic Acids Res | 2017 |
| 26903996 | PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. | Front Microbiol | 2016 |
| 27933038 | Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation. | Front Microbiol | 2016 |
| 27297683 | Antimicrobial Resistance Prediction in PATRIC and RAST. | Sci Rep | 2016 |
| 25666585 | RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. | Sci Rep | 2015 |
| 28324362 | Enabling comparative modeling of closely related genomes: example genus Brucella. | 3 Biotech | 2015 |
| 24225323 | PATRIC, the bacterial bioinformatics database and analysis resource. | Nucleic Acids Res | 2014 |
| 24927599 | High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. | Proc Natl Acad Sci U S A | 2014 |
| 24293654 | The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). | Nucleic Acids Res | 2014 |
| 23047562 | Real time metagenomics: using k-mers to annotate metagenomes. | Bioinformatics | 2012 |
| 23110173 | SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. | PLoS One | 2012 |
| 21421023 | Connecting genotype to phenotype in the era of high-throughput sequencing. | Biochim Biophys Acta | 2011 |
| 20546611 | Accessing the SEED genome databases via Web services API: tools for programmers. | BMC Bioinformatics | 2010 |
| 18337718 | Functional metagenomic profiling of nine biomes. | Nature | 2008 |
| 18803844 | The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. | BMC Bioinformatics | 2008 |
| 18261238 | The RAST Server: rapid annotations using subsystems technology. | BMC Genomics | 2008 |
| 17145713 | The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. | Nucleic Acids Res | 2007 |
| 16267141 | Origin and evolution of the chloroplast trnK (matK) intron: a model for evolution of group II intron RNA structures. | Mol Biol Evol | 2006 |
| 17090214 | The marine viromes of four oceanic regions. | PLoS Biol | 2006 |
| 16214803 | The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. | Nucleic Acids Res | 2005 |
| 12520040 | Database for mobile group II introns. | Nucleic Acids Res | 2003 |