Author details

Full Name

Charles DeLisi

Affiliation

ORCID

Career Start Year

1971

Papers

208

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37338270	Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation.		2023
34992248	Constructive principles for gene editing oversight.	Nat Biotechnol	2022
32511530	Analysis of Covid-19 Data for Eight European Countries and the United Kingdom Using a Simplified SIR Model.		2020
37849905	The Role of Synthetic Biology in Atmospheric Greenhouse Gas Reduction: Prospects and Challenges.	Biodes Res	2020
33140039	Analysis of Covid-19 Data for Eight European Countries and the United Kingdom Using a Simplified SIR Model.		2020
31429783	The role of synthetic biology in climate change mitigation.	Biology Direct	2019
31783901	Correction to: The role of synthetic biology in climate change mitigation.	Biology Direct	2019
26625895	Mutated Pathways as a Guide to Adjuvant Therapy Treatments for Breast Cancer.	Molecular Cancer Therapeutics	2016
27081850	Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0.	PLoS Computational Biology	2016
27475327	A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer.	BMC Medical Genomics	2016
26941962	Igf1 and Pacap rescue cerebellar granule neurons from apoptosis via a common transcriptional program.	Cell Death Discovery	2015
25961669	Evaluation and integration of cancer gene classifiers: identification and ranking of plausible drivers.	Scientific Reports	2015
23716640	VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.	Nucleic Acids Research	2013
24013487	The COMBREX project: design, methodology, and initial results.	PLoS Biol	2013
23192550	Genome-wide association studies.	Methods in Molecular Biology	2013
21900207	Gene set enrichment analysis: performance evaluation and usage guidelines.	Brief Bioinform	2012
22759382	Pathway-based classification of cancer subtypes.	Biology Direct	2012
22346740	Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer.	PLoS Computational Biology	2012
22443377	Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge.	BMC Bioinformatics	2012
23062343	TATA binding proteins can recognize nontraditional DNA sequences.	Biophysical Journal	2012
22101971	The NIH National Center for Integrative Biomedical Informatics (NCIBI).	J Am Med Inform Assoc	2012
21827660	Combinations of newly confirmed Glioma-Associated loci link regions on chromosomes 1 and 9 to increased disease risk.	BMC Medical Genomics	2011
21097892	COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.	Nucleic Acids Res	2011
22081596	Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer.	Genome Inform	2010
20035975	Identification of a microRNA panel for clear-cell kidney cancer.	Urology	2010
20423531	Phenotypic connections in surprising places.		2010
20097056	Label-free microarray imaging for direct detection of DNA hybridization and single-nucleotide mismatches.	Biosensors and Bioelectronics	2010
20187943	Identification of functional modules that correlate with phenotypic difference: the influence of network topology.	Genome Biol	2010
19465394	VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.	Nucleic Acids Res	2009
19728866	Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network.	Genome Biol	2009
18639284	Identification of novel epigenetic markers for clear cell renal cell carcinoma.	Journal of Urology	2008
19163247	Applications of optical resonance to biological imaging and label-free protein microarrays.		2008
19823593	Resonant Cavity Imaging: A Means Toward High-Throughput Label-Free Protein Detection.	IEEE Journal of Selected Topics in Quantum Electronics	2008
18298847	High-precision high-coverage functional inference from integrated data sources.	BMC Bioinformatics	2008
18513408	Classifying transcription factor targets and discovering relevant biological features.	Biology Direct	2008
18923499	Meetings that changed the world: Santa Fe 1986: Human genome baby-steps.	Nature	2008
18564415	In silico regulatory analysis for exploring human disease progression.	Biology Direct	2008
18463131	VisANT: an integrative framework for networks in systems biology.	Briefings in Bioinformatics	2008
19003435	Machine learning for regulatory analysis and transcription factor target prediction in yeast.	Systems and Synthetic Biology	2007
19458770	Data perturbation independent diagnosis and validation of breast cancer subtypes using clustering and patterns.	Cancer Inform	2007
19455236	Identification and characterization of renal cell carcinoma gene markers.	Cancer Informatics	2007
17914245	Analysis of breast cancer progression using principal component analysis and clustering.	J Biosci	2007
17586824	VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.	Nucleic Acids Res	2007
17500587	Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites.	PLoS Computational Biology	2007
17204484	Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes.	Nucleic Acids Research	2007
17683614	Portraits of breast cancer progression.	BMC Bioinformatics	2007
17483841	Towards zoomable multidimensional maps of the cell.	Nat Biotechnol	2007
18006808	High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates.	Cancer Res	2007
18546481	Breast cancer stratification from analysis of micro-array data of micro-dissected specimens.	Genome Inform	2007
17052348	Towards the identification of essential genes using targeted genome sequencing and comparative analysis.	BMC Genomics	2006