Author details

Full Name

Alexander Krasnitz

Affiliation

Simons Center for Quantitative Biology

ORCID

Career Start Year

1988

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36351074	Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms.	Cancer Res	2023
36594871	Correction: Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms.	Cancer Res	2023
35978189	Ordered and deterministic cancer genome evolution after p53 loss.	Nature	2022
32401198	Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing.	Elife	2020
32083660	Multiplex accurate sensitive quantitation (MASQ) with application to minimal residual disease in acute myeloid leukemia.	Nucleic Acids Res	2020
31727682	Copolymerization of single-cell nucleic acids into balls of acrylamide gel.	Genome Res	2020
32633781	SOAT1 promotes mevalonate pathway dependency in pancreatic cancer.	J Exp Med	2020
32703770	Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes.	Cancer Discov	2020
32432904	Integrated Computational Pipeline for Single-Cell Genomic Profiling.	JCO Clin Cancer Inform	2020
30378070	CORE: A Software Tool for Delineating Regions of Recurrent DNA Copy Number Alteration in Cancer.	Methods Mol Biol	2019
31433971	The Immune Landscape of Cancer.	Immunity	2019
30378078	Statistically Supported Identification of Tumor Subtypes.	Methods Mol Biol	2019
29180472	Utility of Single-Cell Genomics in Diagnostic Evaluation of Prostate Cancer.	Cancer Res	2018
29853643	Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer.	Cancer Discov	2018
29625051	Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation.	Cell	2018
28587830	Early Detection of Cancer in Blood Using Single-Cell Analysis: A Proposal.	Trends Mol Med	2017
28989791	Sweepstake evolution revealed by population-genetic analysis of copy-number alterations in single genomes of breast cancer.	R Soc Open Sci	2017
27681436	Mammary Tumor-Associated RNAs Impact Tumor Cell Proliferation, Invasion, and Migration.	Cell Rep	2016
25858951	Optimizing sparse sequencing of single cells for highly multiplex copy number profiling.	Genome Res	2015
25030933	Computational methods for DNA copy-number analysis of tumors.	Methods Mol Biol	2014
25409689	Significant distinct branches of hierarchical trees: a framework for statistical analysis and applications to biological data.	BMC Genomics	2014
23744040	Target inference from collections of genomic intervals.	Proc Natl Acad Sci U S A	2013
23805207	Two Distinct Categories of Focal Deletions in Cancer Genomes.	PLoS One	2013
22566646	A cluster of cooperating tumor-suppressor gene candidates in chromosomal deletions.	Proc Natl Acad Sci U S A	2012
22722845	A tumour suppressor network relying on the polyamine-hypusine axis.	Nature	2012
22750847	DDX5 regulates DNA replication and is required for cell proliferation in a subset of breast cancer cells.	Cancer Discov	2012
21399628	Tumour evolution inferred by single-cell sequencing.	Nature	2011
19903760	Inferring tumor progression from genomic heterogeneity.	Genome Res	2010
20829823	Towards patient-based cancer therapeutics.	Nat Biotechnol	2010
20592421	Genomic architecture characterizes tumor progression paths and fate in breast cancer patients.	Sci Transl Med	2010
20434983	A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding.	Cell	2010
18922857	Novel genomic alterations and clonal evolution in chronic lymphocytic leukemia revealed by representational oligonucleotide microarray analysis (ROMA).	Blood	2009
19800577	Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model.	Cancer Cell	2009
18519636	DLC1 is a chromosome 8p tumor suppressor whose loss promotes hepatocellular carcinoma.	Genes Dev	2008
18719096	Brk is coamplified with ErbB2 to promote proliferation in breast cancer.	Proc Natl Acad Sci U S A	2008
19012953	An oncogenomics-based in vivo RNAi screen identifies tumor suppressors in liver cancer.	Cell	2008
17363630	Strong association of de novo copy number mutations with autism.	Science	2007
17925434	Oncogenic cooperation and coamplification of developmental transcription factor genes in lung cancer.	Proc Natl Acad Sci U S A	2007
17912030	Copy-number variants in patients with a strong family history of pancreatic cancer.	Cancer Biol Ther	2007
17142309	Novel patterns of genome rearrangement and their association with survival in breast cancer.	Genome Res	2006
16869738	High-resolution ROMA CGH and FISH analysis of aneuploid and diploid breast tumors.	Cold Spring Harb Symp Quant Biol	2005
11690405	Coherent gluon production in very-high-energy heavy-ion collisions.	Phys Rev Lett	2001
11290231	Initial gluon multiplicity in heavy-ion collisions.	Phys Rev Lett	2001
10990673	Initial energy density of gluons produced in very-high-energy nuclear collisions	Phys Rev Lett	2000
10016929	Effects of spatial size, lattice doubling, and source operators on the hadron spectrum with dynamical staggered quarks at 6/g2=5.6.	Phys Rev D Part Fields	1994
10017646	Chern-Simons number diffusion in (1+1)-dimensional Higgs theory.	Phys Rev D Part Fields	1994
10017350	Hadron spectrum and matrix elements in QCD with dynamical Wilson fermions at 6/g2=5.3.	Phys Rev D Part Fields	1994
10016931	Baryon density correlations in high temperature hadronic matter.	Phys Rev D Part Fields	1994
10015982	Thermodynamics of lattice QCD with two light quarks on a 16(3) x 8 lattice.	Phys Rev D Part Fields	1993
10016722	Finite-size and quark mass effects on the QCD spectrum with two flavors.	Phys Rev D Part Fields	1993

1 - 50 of 64

Geoff Macintyre

CRUK Cambridge Institute, University of Cambridge

Career Start Year 2009

Number of shared co-authors 1

Davide Prandi

University of Trento

Career Start Year 2009

Number of shared co-authors 4

Moritz Gerstung

German Cancer Research Centre DKFZ

Career Start Year 2007

Number of shared co-authors 5

Paz Polak

McGill University

Career Start Year 2006

Number of shared co-authors 13

Xiaotu Ma

St. Jude Children's Research Hospital

Career Start Year 2006

Number of shared co-authors 3

David C Wedge

Manchester Cancer Research Centre, University of Manchester

Career Start Year 2006

Number of shared co-authors 9

Jeroen de Ridder

Center for Molecular Medicine, University Medical Center Utrecht

Career Start Year 2006

Number of shared co-authors 2

Matti Nykter

Prostate Cancer Research Center, Tampere University and Tays Cancer Center

Career Start Year 2006

Number of shared co-authors 7

Tommaso Mazza

Fondazione IRCCS Casa Sollievo della Sofferenza,71013

Career Start Year 2005

Number of shared co-authors 0

Jun S Song

University of Illinois at Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Chris Greenman

University of East Anglia

Career Start Year 2004

Number of shared co-authors 4

Matthias Schlesner

University of Augsburg

Career Start Year 2004

Number of shared co-authors 4

Peter J Campbell

Wellcome Sanger Institute

Career Start Year 2003

Number of shared co-authors 23

Peter Van Loo

The Francis Crick Institute

Career Start Year 2003

Number of shared co-authors 8

Olivier Elemento

Meyer Cancer Center

Career Start Year 2002

Number of shared co-authors 16

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Career Start Year 2000

Number of shared co-authors 46

Xingzhi Song

The University of Texas MD Anderson Cancer Center

Career Start Year 1998

Number of shared co-authors 27

Michael C Wendl

Washington University in St Louis

Career Start Year 1998

Number of shared co-authors 20

Paul T Spellman

Oregon Health & Science University Hospital.

Career Start Year 1998

Number of shared co-authors 18

Roland Eils

Berlin Institute of Health (BIH) and Charite

Career Start Year 1995

Number of shared co-authors 8

Samuel Aparicio

University of British Columbia

Career Start Year 1993

Number of shared co-authors 11

Adam B Olshen

12224University of California san francisco

Career Start Year 1993

Number of shared co-authors 9

Gustavo Stolovitzky

IBM T.J. Watson Research Center

Career Start Year 1990

Number of shared co-authors 17

Pablo Tamayo

University of California San Diego

Career Start Year 1988

Number of shared co-authors 18

Elaine R Mardis

The Ohio State University

Career Start Year 1988

Number of shared co-authors 23

Eivind Hovig

Center for Bioinformatics, University of Oslo

Career Start Year 1987

Number of shared co-authors 5

Nir Yosef

Center for Computational Biology, University of California berkeley

Career Start Year 1986

Number of shared co-authors 4

Yuval Kluger

Yale University School of Medicine

Career Start Year 1984

Number of shared co-authors 1

David A Wheeler

Baylor College of Medicine

Career Start Year 1984

Number of shared co-authors 45

Francesca Demichelis

University of Trento

Career Start Year 1969

Number of shared co-authors 11

row(s) 1 - 30 of 30

James Hicks

Michelson Center for Convergent Bioscience, University of Southern California

Co-authored papers 15

Balasubramanian Lakshmi

Bharathidasan University, Indian Institute of Science

Co-authored papers 6

Lars Zender

Co-authored papers 4

Seungtai Yoon

Co-authored papers 3

Wen Xue

Co-authored papers 3

Anne-Lise B??rresen-Dale

Institute for Cancer Research, Oslo University Hospital

Co-authored papers 3

Faiyaz Notta

2Ontario Institute for Cancer Research

Co-authored papers 3

Jonathan Sebat

University of California San Diego

Co-authored papers 2

John N Weinstein

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Nyasha Chambwe

Institute of Molecular Medicine, Feinstein Institutes for Medical Research

Co-authored papers 2

Antonio Colaprico

Sylvester Comprehensive Cancer Center, University of Miami Miller School of Medicine

Co-authored papers 2

Brian D Robinson

Sandra and Edward Meyer Cancer Center

Co-authored papers 2

Steven Gallinger

Lunenfeld Tanenbaum Research Institute, Mount Sinai Hospital, University of Toronto

Co-authored papers 2

Lakshmi Muthuswamy

Harvard Medical School

Co-authored papers 2

Jesse Gillis

Stanley Institute for Cognitive Genomics

Co-authored papers 2

Gun Ho Jang

Ontario Institute for Cancer Research

Co-authored papers 2

Andrew J Gentles

Stanford Center for Biomedical Informatics Research, Stanford University

Co-authored papers 2

Houtan Noushmehr

Henry Ford Hospital

Co-authored papers 2

Andrea Califano

Columbia University

Co-authored papers 2

Gregory J Hannon

Co-authored papers 2

Tathiane M Malta

School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo

Co-authored papers 2

Alexander J Lazar

The University of Texas MD Anderson Cancer Center

Co-authored papers 2

Hans Clevers

Princess Maxima Center for Pediatric Oncology

Co-authored papers 1

Robert J Weil

Rhode Island Hospital

Co-authored papers 1

Qing Liu

Co-authored papers 1

Joel S Parker

Lineberger Cancer Center, University of North Carolina

Co-authored papers 1

Nam Sy Vo

Vingroup Big Data Institute

Co-authored papers 1

Dheeraj Malhotra

MS Research Unit

Co-authored papers 1

William C Hahn

Broad Institute of MIT and Harvard, USA Dana-Farber Cancer Institute

Co-authored papers 1

Aaron M Newman

Stanford University

Co-authored papers 1

1 - 30

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