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Author Details

Pawel A Penczek
The University of Texas, McGovern Medical School
1988
95
54
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
33209314Reliable cryo-EM resolution estimation with modified Fourier shell correlation.IUCrJ2020
31995744MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling.Structure2020
31576224MicroED with the Falcon III direct electron detector.IUCrJ2019
294607803.3-ÿ resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound.Elife2018
30010541Membrane insertion of α-xenorhabdolysin in near-atomic detail.Elife2018
28570515High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE.J Vis Exp2017
27746017Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex.Mol Cell2016
25470062Structure of the F-actin-tropomyosin complex.Nature2015
26170309Unique double-ring structure of the peroxisomal Pex1/Pex6 ATPase complex revealed by cryo-electron microscopy.Proc Natl Acad Sci U S A2015
25910204A primer to single-particle cryo-electron microscopy.Cell2015
25957688Structural snapshots of actively translating human ribosomes.Cell2015
24562077CTER-rapid estimation of CTF parameters with error assessment.Ultramicroscopy2014
25043026Visualization of arrestin recruitment by a G-protein-coupled receptor.Nature2014
25018021Molecular imprinting as a signal-activation mechanism of the viral RNA sensor RIG-I.Mol Cell2014
23341604Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.Proc Natl Acad Sci U S A2013
22325770Outcome of the first electron microscopy validation task force meeting.Structure2012
22817895Structure of the rigor actin-tropomyosin-myosin complex.Cell2012
22579255Interaction of the mediator head module with RNA polymerase II.Structure2012
22573332Arrangement of the respiratory chain complexes in Saccharomyces cerevisiae supercomplex III2IV2 revealed by single particle cryo-electron microscopy.J Biol Chem2012
22248449Real-space processing of helical filaments in SPARX.J Struct Biol2012
22325773Iterative stable alignment and clustering of 2D transmission electron microscope images.Structure2012
22078558Identifying conformational states of macromolecules by eigen-analysis of resampled cryo-EM images.Structure2011
20888956Fundamentals of three-dimensional reconstruction from projections.Methods Enzymol2010
21124459Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites.Nature2010
20888958Resolution measures in molecular electron microscopy.Methods Enzymol2010
20888957Image restoration in cryo-electron microscopy.Methods Enzymol2010
19229291GTPase activation of elongation factor EF-Tu by the ribosome during decoding.EMBO J2009
19767196Exploring conformational modes of macromolecular assemblies by multiparticle cryo-EM.Curr Opin Struct Biol2009
19208805Rubisco in complex with Rubisco large subunit methyltransferase.Proc Natl Acad Sci U S A2009
18499351Cryo-EM image alignment based on nonuniform fast Fourier transform.Ultramicroscopy2008
19081053Heterogeneity of large macromolecular complexes revealed by 3D cryo-EM variance analysis.Structure2008
16859923The parallelization of SPIDER on distributed-memory computers using MPI.J Struct Biol2007
18082611Structural organization of the anaphase-promoting complex bound to the mitotic activator Slp1.Mol Cell2007
16931051SPARX, a new environment for Cryo-EM image processing.J Struct Biol2007
16861004The Transform Class in SPARX and EMAN2.J Struct Biol2007
16615908The endosome-associated protein Hrs is hexameric and controls cargo sorting as a "master molecule".Structure2006
17115051Structure of the ribosome-bound cricket paralysis virus IRES RNA.Nat Struct Mol Biol2006
16520062A method of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation.J Struct Biol2006
16510296Estimation of variance in single-particle reconstruction using the bootstrap technique.J Struct Biol2006
16531235Cryo-electron microscopy studies of human TFIID: conformational breathing in the integration of gene regulatory cues.Structure2006
15629657Unified 3-D structure and projection orientation refinement using quasi-Newton algorithm.J Struct Biol2005
16244660ERj1p uses a universal ribosomal adaptor site to coordinate the 80S ribosome at the membrane.Nat Struct Mol Biol2005
15866744Estimating alignment errors in sets of 2-D images.J Struct Biol2005
15065668Automatic particle selection: results of a comparative study.J Struct Biol2004
15361411Rearrangement of the 16S precursor subunits is essential for the formation of the active 20S proteasome.Biophys J2004
14976550Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.EMBO J2004
15078020Gridding-based direct Fourier inversion of the three-dimensional ray transform.J Opt Soc Am A Opt Image Sci Vis2004
15065671Application of template matching technique to particle detection in electron micrographs.J Struct Biol2004
14643204Analytical methods and software tools for macromolecular microscopy.J Struct Biol2003
14643211Automated determination of parameters describing power spectra of micrograph images in electron microscopy.J Struct Biol2003
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Collaborators

Joachim Frank
Columbia University
Co-authored papers 43
Christian M T Spahn
Institut fur Medizinische Physik und Biophysik, Charite-Universitatsmedizin Berlin
Co-authored papers 20
Rajendra K Agrawal
School of Public Health, University at Albany
Co-authored papers 14
Roland Beckmann
University of Munich
Co-authored papers 6
Edward H Egelman
University of Virginia
Co-authored papers 4
Francisco J Asturias
University of Colorado Anschutz Medical Campus
Co-authored papers 4
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 3
G??nter Blobel
Howard Hughes Medical Institute, The Rockefeller University
Co-authored papers 3
David L Stokes
NYU School of Medicine
Co-authored papers 3
Robert M Glaeser
Lawrence Berkeley National Laboratory
Co-authored papers 3
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 3
Steven J Ludtke
Baylor College of Medicine
Co-authored papers 3
Bridget Carragher
Columbia University
Co-authored papers 3
Nenad Ban
Institute of Molecular Biology and Biophysics, ETH Zurich
Co-authored papers 2
Nikolaus Grigorieff
RNA Therapeutics Institute, University of Massachusetts Chan Medical School
Co-authored papers 2
Frank DiMaio
University of Washington
Co-authored papers 2
Narayanan Eswar
University of California at San Francisco
Co-authored papers 2
Georgios Skiniotis
Stanford University School of Medicine
Co-authored papers 1
Alasdair C Steven
National Institutes of Health
Co-authored papers 1
Kunhong Xiao
Co-authored papers 1
David Baker
University of Washington
Co-authored papers 1
Jurgen Helmers
Howard Hughes Medical Institute, The Rockefeller University
Co-authored papers 1
Matthew L Baker
McGovern Medical School at the University of Texas Health Science Center
Co-authored papers 1
Huanwang Yang
The State University of New Jersey
Co-authored papers 1
Michael G Rossmann
Purdue University
Co-authored papers 1
Sachdev S Sidhu
School of Pharmacy, University of Waterloo
Co-authored papers 1
Dmitri I Svergun
King's College London BHF Centre for Research Excellence
Co-authored papers 1
Melanie D Ohi
Co-authored papers 1
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Release 1.2