Author details

Full Name

Anne-Ruxandra Carvunis

Affiliation

University of Pittsburgh School of Medicine.

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36593290	De novo gene increases brain size.	Nat Ecol Evol	2023
38048358	Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry.	PLoS Biol	2023
37927910	Unannotated Open Reading Frame in <i>Saccharomyces cerevisiae</i> Encodes Protein Localizing to the Endoplasmic Reticulum.	MicroPubl Biol	2023
36945638	Biological Factors and Statistical Limitations Prevent Detection of Most Noncanonical Proteins by Mass Spectrometry.	bioRxiv	2023
37164009	A vast evolutionarily transient translatome contributes to phenotype and fitness.	Cell Syst	2023
36379252	On the illusion of auxotrophy: met15Î¿ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w.	J Biol Chem	2022
35831657	Standardized annotation of translated open reading frames.	Nat Biotechnol	2022
35639793	Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow.	PLoS Comput Biol	2022
35660762	RNF219 regulates CCR4-NOT function in mRNA translation and deadenylation.	Sci Rep	2022
33398071	Author Correction: De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.	Nat Commun	2021
33602841	New genes from borrowed parts.	Science	2021
33693606	LI Detector: a framework for sensitive colony-based screens regardless of the distribution of fitness effects.	G3 (Bethesda)	2021
34946813	Evolutionary Characterization of the Short Protein SPAAR.	Genes (Basel)	2021
32619550	Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome.	Cell Syst	2020
34164225	The Recalcitrance and Resilience of Scientific Function.	Poroi	2020
32066524	Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes.	Elife	2020
32034123	De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences.	Nat Commun	2020
31120894	De novo gene birth.	PLoS Genet	2019
29670240	Of mice, men and immunity: a case for evolutionary systems biology.	Nat Immunol	2018
28087778	No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution.	Mol Biol Evol	2017
27357687	Mapping transcription factor interactome networks using HaloTag protein arrays.	Proc Natl Acad Sci U S A	2016
26682651	Evidence for a common evolutionary rate in metazoan transcriptional networks.	Elife	2015
24766803	Siri of the cell: what biology could learn from the iPhone.	Cell	2014
25416956	A proteome-scale map of the human interactome network.	Cell	2014
24045689	Integrative approaches for finding modular structure in biological networks.	Nat Rev Genet	2013
24360959	A UV-induced genetic network links the RSC complex to nucleotide excision repair and shows dose-dependent rewiring.	Cell Rep	2013
22480639	[Virulence effectors target key proteins of interactome networks of host plant cells].	Med Sci (Paris)	2012
22722833	Proto-genes and de novo gene birth.	Nature	2012
22810586	Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins.	Nature	2012
22911607	Genome-wide identification of Pseudomonas aeruginosa virulence-related genes using a Caenorhabditis elegans infection model.	PLoS Pathog	2012
21798943	Independently evolved virulence effectors converge onto hubs in a plant immune system network.	Science	2011
19123269	Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.	Nat Methods	2009
19602354	[Systems biology: from yesterday's concepts to tomorrow's discoveries].	Med Sci (Paris)	2009
19116613	Literature-curated protein interaction datasets.	Nat Methods	2009
18502943	Revisiting the Saccharomyces cerevisiae predicted ORFeome.	Genome Res	2008
17486083	Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.	Nat Biotechnol	2007

1 - 36 of 36

Alex N Nguyen Ba

University of Toronto at Mississauga

Career Start Year 2009

Number of shared co-authors 1

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 11

Francesc L??pez-Gir??ldez

Yale Center for Genomic Analysis

Career Start Year 2005

Number of shared co-authors 0

Christine Vogel

Center for Genomics and Systems Biology, New York University

Career Start Year 2003

Number of shared co-authors 1

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Madan Mohan Babu

St. Jude Children's Research Hospital

Career Start Year 2002

Number of shared co-authors 6

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 4

Hao Li

School of Public Health, Guangdong Medical University

Career Start Year 2002

Number of shared co-authors 2

Rajkumar Sasidharan

University of California los angeles

Career Start Year 2000

Number of shared co-authors 3

Karsten Hokamp

Smurfit Institute of Genetics, Trinity College of Dublin

Career Start Year 1999

Number of shared co-authors 1

Lars M Steinmetz

Stanford University

Career Start Year 1998

Number of shared co-authors 2

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 1

Sarah A Teichmann

Wellcome Sanger Institute

Career Start Year 1996

Number of shared co-authors 12

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 1

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 2

Steven E Brenner

University of California berkeley

Career Start Year 1994

Number of shared co-authors 6

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 1

Joel S Bader

Johns Hopkins University

Career Start Year 1993

Number of shared co-authors 7

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 3

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 1

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Career Start Year 1993

Number of shared co-authors 1

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 1

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 15

Arcady Mushegian

National Science Foundation

Career Start Year 1991

Number of shared co-authors 0

Miguel A Andrade-Navarro

Institute of Organismic and Molecular Evolution, Johannes Gutenberg University

Career Start Year 1991

Number of shared co-authors 1

Chris P Ponting

The University of Edinburgh

Career Start Year 1989

Number of shared co-authors 7

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 8

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 3

Itai Yanai

Institute for Systems Genetics NYU Grossman School of Medicine

Career Start Year 1977

Number of shared co-authors 2

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 7

row(s) 1 - 30 of 30

Marc Vidal

Blavatnik Institute, Harvard Medical School

Co-authored papers 10

Aaron Wacholder

University of Pittsburgh

Co-authored papers 8

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 8

Frederick P Roth

University of Toronto

Co-authored papers 6

Nelson C Coelho

University of Pittsburgh, USA Pittsburgh Center for Evolutionary Biology and Medicine

Co-authored papers 5

Omer Acar

University of Illinois at Chicago

Co-authored papers 4

Stephen Branden Van Oss

University of Pittsburgh

Co-authored papers 4

Nicolas Simonis

Co-authored papers 4

Aoife McLysaght

Smurfit Institute of Genetics, Trinity College Dublin

Co-authored papers 3

Albert-L??szl?? Barab??si

Network Science Institute, Northeastern University

Co-authored papers 3

Nikolaos Vakirlis

Institute for General Microbiology, Christian Albrechts University

Co-authored papers 3

Joseph R Ecker

The Salk Institute for Biological Studies

Co-authored papers 3

Kavitha Venkatesan

Co-authored papers 3

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Co-authored papers 3

Allyson F O'Donnell

University of Pittsburgh

Co-authored papers 2

Jonathan S Weissman

Whitehead Institute for Biomedical Research

Co-authored papers 2

Huaming Chen

The Salk Institute for Biological Studies

Co-authored papers 2

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 2

Brian Hsu

University of California San Diego

Co-authored papers 2

Kate Medetgul-Ernar

University of California San Diego Health Moores Cancer Center.

Co-authored papers 2

Katherine Licon

University of California San Diego

Co-authored papers 2

Nicolas Bertin

University Bordeaux, CNRS

Co-authored papers 2

Jason F Kreisberg

University of California San Diego

Co-authored papers 2

Tina Wang

Harvard University

Co-authored papers 2

Ray W Bowman

University of Pittsburgh

Co-authored papers 1

Nidhi Sahni

The University of Texas MD Anderson Cancer Center

Co-authored papers 1

Marc Brehme

Delft University of Technology

Co-authored papers 1

Peter D Adams

Sanford Burnham Prebys Medical Discovery Institute

Co-authored papers 1

Sovan Sarkar

CRUK MRC Oxford Institute for Radiation Oncology, University of Oxford

Co-authored papers 1

Haico van Attikum

Leiden University Medical Center

Co-authored papers 1

1 - 30

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