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Author Details

James E Bray
University of Oxford
1999
66
30
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36906027First reported detection of the mobile colistin resistance genes, mcr-8 and mcr-9, in the Irish environment.Sci Total Environ2023
37928684Phylogenomics of <i>Acinetobacter</i> species and analysis of antimicrobial resistance genes.Front Microbiol2023
35275805<i>Thiomicrorhabdus heinhorstiae</i> sp. nov. and <i>Thiomicrorhabdus cannonii</i> sp. nov.: novel sulphur-oxidizing chemolithoautotrophs isolated from the chemocline of Hospital Hole, an anchialine sinkhole in Spring Hill, Florida, USA.Int J Syst Evol Microbiol2022
35840033Impact of meningococcal ACWY conjugate vaccines on pharyngeal carriage in adolescents: evidence for herd protection from the UK MenACWY programme.Clin Microbiol Infect2022
36098501Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to <i>Klebsiella</i> and <i>Raoultella</i> genomic species validation.Microb Genom2022
33482143Meningococcal carriage in periods of high and low invasive meningococcal disease incidence in the UK: comparison of UKMenCar1-4 cross-sectional survey results.Lancet Infect Dis2021
33706038A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019.Environ Int2021
33754991Evolution of Sequence Type 4821 Clonal Complex Hyperinvasive and Quinolone-Resistant Meningococci.Emerg Infect Dis2021
33862060Genomic epidemiology of group B streptococci spanning 10 years in an Irish maternity hospital, 2008-2017.J Infect2021
34473686Screening Programs for SARS-CoV-2 Infections on a University Campus - Austin, Texas, September 30-November 30, 2020.MMWR Morb Mortal Wkly Rep2021
32484827Distribution of class 1 integrons in historic and contemporary collections of human pathogenic Escherichia coli.PLoS One2020
32108139Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease.Sci Rep2020
31141820cgMLST characterisation of invasive Neisseria meningitidis serogroup C and W strains associated with increasing disease incidence in the Republic of Ireland.PLoS One2019
30858837Genomic Analyses of &gt;3,100 Nasopharyngeal Pneumococci Revealed Significant Differences Between Pneumococci Recovered in Four Different Geographical Regions.Front Microbiol2019
29530862Heavy Metal Susceptibility of Escherichia coli Isolated from Urine Samples from Sweden, Germany, and Spain.Antimicrob Agents Chemother2018
30135218Potential Coverage of the 4CMenB Vaccine against Invasive Serogroup B <i>Neisseria meningitidis</i> Isolated from 2009 to 2013 in the Republic of Ireland.mSphere2018
30487573Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis.Nat Commun2018
30345391Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.Wellcome Open Res2018
27883255Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork.Environ Microbiol2017
28338786Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.Genome Biol Evol2017
28446571Core Genome Multilocus Sequence Typing Scheme for Stable, Comparative Analyses of Campylobacter jejuni and C. coli Human Disease Isolates.J Clin Microbiol2017
29220452A RESTful application programming interface for the PubMLST molecular typing and genome databases.Database (Oxford)2017
28591853Neisseria genomics: current status and future perspectives.Pathog Dis2017
28532434Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad.BMC Genomics2017
28715501Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models.PLoS Comput Biol2017
28609259Clonal Expansion of New Penicillin-Resistant Clade of Neisseria meningitidis Serogroup W Clonal Complex 11, Australia.Emerg Infect Dis2017
28579305Frequent capsule switching in 'ultra-virulent' meningococci - Are we ready for a serogroup B ST-11 complex outbreak?J Infect2017
27101249Correction: Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.PLoS One2016
28133541Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes.Microb Genom2016
27629899Resolution of a Protracted Serogroup B Meningococcal Outbreak with Whole-Genome Sequencing Shows Interspecies Genetic Transfer.J Clin Microbiol2016
27217386Correction for van Tonder et al., Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci.J Clin Microbiol2016
26978068Biofilm Morphotypes and Population Structure among Staphylococcus epidermidis from Commensal and Clinical Samples.PLoS One2016
25526675Towards a systematic analysis of human short-chain dehydrogenases/reductases (SDR): Ligand identification and structure-activity relationships.Chem Biol Interact2015
26515523Genomic epidemiology of age-associated meningococcal lineages in national surveillance: an observational cohort study.Lancet Infect Dis2015
26109474Wild bird-associated Campylobacter jejuni isolates are a consistent source of human disease, in Oxfordshire, United Kingdom.Environ Microbiol Rep2015
25888688Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis.Genome Biol Evol2015
25972423Genomics Reveals the Worldwide Distribution of Multidrug-Resistant Serotype 6E Pneumococci.J Clin Microbiol2015
25984558Genomic Analysis of the Evolution and Global Spread of Hyper-invasive Meningococcal Lineage 5.EBioMedicine2015
25144616Defining the estimated core genome of bacterial populations using a Bayesian decision model.PLoS Comput Biol2014
25425319The domestication of the probiotic bacterium Lactobacillus acidophilus.Sci Rep2014
25584183TypOn: the microbial typing ontology.J Biomed Semantics2014
23979428MLST revisited: the gene-by-gene approach to bacterial genomics.Nat Rev Microbiol2013
22354707Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome.J Struct Funct Genomics2012
21914792Structural and evolutionary basis for the dual substrate selectivity of human KDM4 histone demethylase family.J Biol Chem2011
20541610High-throughput production of human proteins for crystallization: the SGC experience.J Struct Biol2010
19027726The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative.Chem Biol Interact2009
19061874The human short-chain dehydrogenase/reductase (SDR) superfamily: a bioinformatics summary.Chem Biol Interact2009
18235434Protein production and purification.Nat Methods2008
17125854Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.Mol Biochem Parasitol2007
17589501Crystal structures of histone demethylase JMJD2A reveal basis for substrate specificity.Nature2007
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Collaborators

University College London, Institute of Structural and Molecular Biology
Co-authored papers 13
University College London
Co-authored papers 6
Botnar Research Centre, University of Oxford
Co-authored papers 6
University of Toronto
Co-authored papers 5
University of Bristol
Co-authored papers 5
University of Toronto
Co-authored papers 3
University of Toronto
Co-authored papers 3
Structural Genomics Consortium Karolinska Institute Stockholm Sweden.
Co-authored papers 3
Co-authored papers 2
Canadian Arthritis Patient Alliance and Five02 Labs Inc.
Co-authored papers 2
Co-authored papers 2
Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin
Co-authored papers 2
Ontario Institute for Cancer Research
Co-authored papers 2
University of Toronto
Co-authored papers 2
Hospital for Sick Children
Co-authored papers 2
University of Toronto
Co-authored papers 2
University of Zurich
Co-authored papers 2
University of Guelph
Co-authored papers 2
College Street, University of Toronto
Co-authored papers 2
Boston University School of Medicine, Boston University
Co-authored papers 2
Center for Structural Biology of Infectious Diseases, University of Chicago
Co-authored papers 2
Co-authored papers 2
University of Toronto, College Street
Co-authored papers 2
University of Toronto
Co-authored papers 2
University Hospital of Wales
Co-authored papers 2
University of California San Francisco
Co-authored papers 2
University of Toronto
Co-authored papers 2
Nara Institute of Science and Technology
Co-authored papers 1
Center for Genomics and Systems Biology, New York University Abu Dhabi (NYUAD)
Co-authored papers 1
Weill Institute for Cell and Molecular Biology, Cornell University
Co-authored papers 1