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Author Details

Amy L Olex
Virginia Commonwealth University
2010
35
15
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37976396Making Use of Natural Language Processing to Better Understand Medical Students' Self-Assessment of Clinical Skills.Acad Med2024
36516563Rituximab is associated with worse COVID-19 outcomes in patients with rheumatoid arthritis: A retrospective, nationally sampled cohort study from the U.S. National COVID Cohort Collaborative (N3C).Semin Arthritis Rheum2023
37537225The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma.Sci Rep2023
37160896Publisher Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.Sci Rep2023
37417428Yin Yang 1 controls cerebellar astrocyte maturation.Glia2023
37012431Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft.Sci Rep2023
37370789Stratification of Tamoxifen Synergistic Combinations for the Treatment of ER+ Breast Cancer.Cancers (Basel)2023
34637599Sex and organ-specific risk of major adverse renal or cardiac events in solid organ transplant recipients with COVID-19.Am J Transplant2022
35674237The risk and consequences of breakthrough SARS-CoV-2 infection in solid organ transplant recipients relative to non-immunosuppressed controls.Am J Transplant2022
36482068Transcriptomic changes underlying EGFR inhibitor resistance in human and mouse models of basal-like breast cancer.Sci Rep2022
36352893Temporal disambiguation of relative temporal expressions in clinical texts.Front Res Metr Anal2022
35951425TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4.Database (Oxford)2022
35306931Racial disparities in COVID-19 test positivity among people living with HIV in the United States.Int J STD AIDS2022
34962505Association Between Immune Dysfunction and COVID-19 Breakthrough Infection After SARS-CoV-2 Vaccination in the US.JAMA Intern Med2022
34188118Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer.Sci Rep2021
33880552Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines.Gigascience2021
33862232Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be.J Biomed Inform2021
33772010The human intermediate prolactin receptor is a mammary proto-oncogene.NPJ Breast Cancer2021
34646938COVID-19 in Solid Organ Transplantation: Results of the National COVID Cohort Collaborative.Transplant Direct2021
34628286Identification of nuclear export inhibitor-based combination therapies in preclinical models of triple-negative breast cancer.Transl Oncol2021
32477667Local Topic Mining for Reflective Medical Writing.AMIA Jt Summits Transl Sci Proc2020
33296659Regulatory T Cells Support Breast Cancer Progression by Opposing IFN-γ-Dependent Functional Reprogramming of Myeloid Cells.Cell Rep2020
30841919Separation of breast cancer and organ microenvironment transcriptomes in metastases.Breast Cancer Res2019
29259106Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.Plant Physiol2018
29532339Characterizing the efficacy of cancer therapeutics in patient-derived xenograft models of metastatic breast cancer.Breast Cancer Res Treat2018
28062977Angiopoietin pathway gene expression associated with poor breast cancer survival.Breast Cancer Res Treat2017
28187443Analysis of The Cancer Genome Atlas sequencing data reveals novel properties of the human papillomavirus 16 genome in head and neck squamous cell carcinoma.Oncotarget2017
27035059Impact of the Type I Interferon Receptor on the Global Gene Expression Program During the Course of Dendritic Cell Maturation Induced by Polyinosinic Polycytidylic Acid.J Interferon Cytokine Res2016
24630964Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis.Gene2014
24597745Broad phenotypic changes associated with gain of radiation resistance in head and neck squamous cell cancer.Antioxid Redox Signal2014
23382930Disease progression and phasic changes in gene expression in a mouse model of osteoarthritis.PLoS One2013
24045021A kinetic analysis of the auxin transcriptome reveals cell wall remodeling proteins that modulate lateral root development in Arabidopsis.Plant Cell2013
21972019Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice.Arthritis Rheum2012
21372084SC²ATmd: a tool for integration of the figure of merit with cluster analysis for gene expression data.Bioinformatics2011
20682054Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates.BMC Immunol2010
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Collaborators

Mikhail G Dozmorov
Virginia Commonwealth University
Co-authored papers 12
Joshua Chuck Harrell
Virginia Commonwealth University
Co-authored papers 10
Amanda J Vinson
Dalhousie University
Co-authored papers 4
Roslyn B Mannon
University of Nebraska Medical Center
Co-authored papers 4
Bridget T McInnes
Virginia Commonwealth University
Co-authored papers 4
Rena C Patel
University of Washington
Co-authored papers 3
Jasvinder A Singh
University of Alabama at Birmingham
Co-authored papers 2
Jason Reed
Department of Physics Virginia Commonwealth University Richmond VA USA.
Co-authored papers 2
Kathryn C Fitzgerald
Johns Hopkins University School of Medicine
Co-authored papers 2
Gregory D Kirk
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 2
Katarzyna M Tyc
and Massey Cancer Center, Virginia Commonwealth University
Co-authored papers 2
Nathan Sheffield (CM4AI)
University of Virginia
Co-authored papers 1
Timothy Bergquist
University of Washington School of Medicine
Co-authored papers 1
Nasia Safdar
William S. Middleton Memorial Veterans' Hospital
Co-authored papers 1
Nora Franceschini
University of North Carolina
Co-authored papers 1
Joel S Parker
Lineberger Cancer Center, University of North Carolina
Co-authored papers 1
Arun J Sanyal
Virginia Commonwealth University
Co-authored papers 1
Namrata Singh
University of Washington
Co-authored papers 1
David C Boyd
Virginia Commonwealth University
Co-authored papers 1
Alison G Abraham
University of Colorado
Co-authored papers 1
Vithal Madhira
Palila Software LLC
Co-authored papers 1
Umit Topaloglu
Wake Forest School of Medicine
Co-authored papers 1
Jing Sun
25802Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1
Jomol Mathew
University of Wisconsin-Madison
Co-authored papers 1
Christopher G Chute
Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota
Co-authored papers 1
Gaurav Agarwal
University of Alabama at Birmingham
Co-authored papers 1
Alfred J Anzalone
University of Nebraska Medical Center
Co-authored papers 1
Jiang Qian
Co-authored papers 1
Evan French
Co-authored papers 1
Jeff W Chou
Co-authored papers 1
Release 1.2