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Author Details

Alexander E Gorbalenya
Leiden University Medical Center
1977
191
79
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37228002What's what in a pandemic? Virus, disease, and societal disaster must be differentiated.PLoS Biol2023
34883443Bioinformatics of virus taxonomy: foundations and tools for developing sequence-based hierarchical classification.Curr Opin Virol2022
35478717Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal.Virus Evol2022
35073761N7-Methylation of the Coronavirus RNA Cap Is Required for Maximal Virulence by Preventing Innate Immune Recognition.mBio2022
34942540Editorial overview: Virus bioinformatics - empowering genomics of pathogens, viromes, and the virosphere across divergence scales.Curr Opin Virol2022
33413979A nidovirus perspective on SARS-CoV-2.Biochem Biophys Res Commun2021
33662033Recognizing species as a new focus of virus research.PLoS Pathog2021
33774510Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution.Virology2021
35036862Translating genomic exploration of the family <i>Polyomaviridae</i> into confident human polyomavirus detection.iScience2021
34237296Science, not speculation, is essential to determine how SARS-CoV-2 reached humans.Lancet2021
34356005ICTV Virus Taxonomy Profile: <i>Arteriviridae</i> 2021.J Gen Virol2021
34108654SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse.Nat Microbiol2021
33472860Coronavirus replication-transcription complex: Vital and selective NMPylation of a conserved site in nsp9 by the NiRAN-RdRp subunit.Proc Natl Acad Sci U S A2021
32003788LAMPA, LArge Multidomain Protein Annotator, and its application to RNA virus polyproteins.Bioinformatics2020
32061897How to recognise and deal with dubious virus sequences?Infect Genet Evol2020
32087122Statement in support of the scientists, public health professionals, and medical professionals of China combatting COVID-19.Lancet2020
31980941Recommendations for the nomenclature of enteroviruses and rhinoviruses.Arch Virol2020
30663020Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).Arch Virol2019
31078932Structural basis for catalysis and substrate specificity of a 3C-like cysteine protease from a mosquito mesonivirus.Virology2019
29754305Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).Arch Virol2018
29942981Increasing the number of available ranks in virus taxonomy from five to ten and adopting the Baltimore classes as taxa at the basal rank.Arch Virol2018
30059721The European Virus Archive goes global: A growing resource for research.Antiviral Res2018
30266005PCR assays for detection of human astroviruses: In silico evaluation and design, and in vitro application to samples collected from patients in the Netherlands.J Clin Virol2018
30383829A planarian nidovirus expands the limits of RNA genome size.PLoS Pathog2018
28053107Domain Organization and Evolution of the Highly Divergent 5' Coding Region of Genomes of Arteriviruses, Including the Novel Possum Nidovirus.J Virol2017
28434098Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2017).Arch Virol2017
28134265Consensus statement: Virus taxonomy in the age of metagenomics.Nat Rev Microbiol2017
2807847550 years of the International Committee on Taxonomy of Viruses: progress and prospects.Arch Virol2017
28884666ICTV Virus Taxonomy Profile: Picornaviridae.J Gen Virol2017
27424026Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2016).Arch Virol2016
26499043Arterivirus RNA-dependent RNA polymerase: Vital enzymatic activity remains elusive.Virology2016
26519899Limited variation during circulation of a polyomavirus in the human population involves the COCO-VA toggling site of Middle and Alternative T-antigen(s).Virology2016
27303747Mutations in Encephalomyocarditis Virus 3A Protein Uncouple the Dependency of Genome Replication on Host Factors Phosphatidylinositol 4-Kinase IIIα and Oxysterol-Binding Protein.mSphere2016
25497126What we know but do not understand about nidovirus helicases.Virus Res2015
26304538Discovery of an essential nucleotidylating activity associated with a newly delineated conserved domain in the RNA polymerase-containing protein of all nidoviruses.Nucleic Acids Res2015
26406250Modulation of the Host Lipid Landscape to Promote RNA Virus Replication: The Picornavirus Encephalomyocarditis Virus Converges on the Pathway Used by Hepatitis C Virus.PLoS Pathog2015
26281304[The prevalence of the human rhinoviruses and coronaviruses circulating in the Moscow region during 2007-2012].Vopr Virusol2015
26041874Arterivirus nsp12 versus the coronavirus nsp16 2'-O-methyltransferase: comparison of the C-terminal cleavage products of two nidovirus pp1ab polyproteins.J Gen Virol2015
25913692Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015).Arch Virol2015
25904630Interspecific adaptation by binary choice at de novo polyomavirus T antigen site through accelerated codon-constrained Val-Ala toggling within an intrinsically disordered region.Nucleic Acids Res2015
24369429Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase.Nucleic Acids Res2014
25197083One severe acute respiratory syndrome coronavirus protein complex integrates processive RNA polymerase and exonuclease activities.Proc Natl Acad Sci U S A2014
23053517No novel coronaviruses identified in a large collection of human nasopharyngeal specimens using family-wide CODEHOP-based primers.Arch Virol2013
23874204The footprint of genome architecture in the largest genome expansion in RNA viruses.PLoS Pathog2013
23678167Middle East respiratory syndrome coronavirus (MERS-CoV): announcement of the Coronavirus Study Group.J Virol2013
23255626From Stockholm to Malawi: recent developments in studying human polyomaviruses.J Gen Virol2013
22278230Partitioning the genetic diversity of a virus family: approach and evaluation through a case study of picornaviruses.J Virol2012
23170166Genetics-based classification of filoviruses calls for expanded sampling of genomic sequences.Viruses2012
23170002Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans.mBio2012
22704621Antagonism of the interferon-induced OAS-RNase L pathway by murine coronavirus ns2 protein is required for virus replication and liver pathology.Cell Host Microbe2012
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Collaborators

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Co-authored papers 7
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Co-authored papers 5
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Co-authored papers 5
Aix Marseille University and CNRS
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Erasmus Medical Center
Co-authored papers 3
Rockefeller University
Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
University of Oxford
Co-authored papers 2
Purdue University
Co-authored papers 2
Karolinska Institutet, BioClinicum J6
Co-authored papers 2
Harvard Medical School, Brigham and Women's Hospital
Co-authored papers 2
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 1
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 1
Massachusetts Institute of Technology
Co-authored papers 1
University of California San Francisco
Co-authored papers 1
The Institute of Medical Science, The University of Tokyo
Co-authored papers 1
Weizmann Institute of Science
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Biodiversity Research Center, Taiwan Institute for Comparative Genomics
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Oncology Research Unit, Inc.
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Broad Institute of MIT and Harvard
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Leiden University Medical Center
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Institute of Ecology and Evolution, University of Edinburgh
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Weizmann Institute of Science
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University of North Carolina
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University of Cambridge
Co-authored papers 1