Author details

Full Name

Julien Lagarde

Affiliation

ORCID

Career Start Year

2004

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37546854	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.	bioRxiv	2023
36420896	GENCODE: reference annotation for the human and mouse genomes in 2023.	Nucleic Acids Res	2023
37398314	CapTrap-Seq: A platform-agnostic and quantitative approach for high-fidelity full-length RNA transcript sequencing.	bioRxiv	2023
35978416	Current challenges and best practices for cell-free long RNA biomarker discovery.	Biomarker Research	2022
35804393	RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing.		2022
33270111	GENCODE 2021.	Nucleic Acids Res	2021
33326074	Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS).	Methods Mol Biol	2021
30357393	GENCODE reference annotation for the human and mouse genomes.	Nucleic Acids Res	2019
29494803	Capturing a Long Look at Our Genetic Library.	Cell Systems	2018
29795125	Towards a complete map of the human long non-coding RNA transcriptome.	Nat Rev Genet	2018
29106417	High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.	Nat Genet	2017
27531712	Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).	Nat Commun	2016
25582907	Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.	Nat Commun	2015
25164755	Comparative analysis of the transcriptome across distant species.	Nature	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
22238572	Evidence for transcript networks composed of chimeric RNAs in human cells.	PLoS One	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22955988	The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.	Genome Res	2012
22955620	Landscape of transcription in human cells.	Nature	2012
18500348	Efficient targeted transcript discovery via array-based normalization of RACE libraries.	Nat Methods	2008
17571346	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.	Nature	2007
17568003	Structured RNAs in the ENCODE selected regions of the human genome.	Genome Res	2007
17567994	Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.	Genome Res	2007
17372197	The implications of alternative splicing in the ENCODE protein complement.	Proc Natl Acad Sci U S A	2007
16925836	EGASP: the human ENCODE Genome Annotation Assessment Project.	Genome Biol	2006
16925838	GENCODE: producing a reference annotation for ENCODE.	Genome Biol	2006
15215427	ArrayProspector: a web resource of functional associations inferred from microarray expression data.	Nucleic Acids Res	2004