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Author Details

Ricardo Z N V??ncio
University of Sao Paulo
2003
68
23
PMIDPaper TitleJournal TitlePublished Year
36504388Integrating Methylome and Transcriptome Signatures Expands the Molecular Classification of the Pituitary Tumors.J Clin Endocrinol Metab2023
36912639A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon.mSystems2023
35290212Vitamin D receptor hypermethylation as a biomarker for pediatric adrenocortical tumors.Eur J Endocrinol2022
35691139Whole genome analysis of UV-induced mutagenesis in Caulobacter crescentus.Mutat Res2022
36557695Low Salt Influences Archaellum-Based Motility, Glycerol Metabolism, and Gas Vesicles Biogenesis in <i>Halobacterium salinarum</i>.Microorganisms2022
36040817DNA methylation is a comprehensive marker for pediatric adrenocortical tumors.Endocr Relat Cancer2022
36049598Vitamin D receptor activation is a feasible therapeutic target to impair adrenocortical tumorigenesis.Mol Cell Endocrinol2022
34209065<i>Halobacterium salinarum</i> and <i>Haloferax volcanii</i> Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites.Genes (Basel)2021
34573415Environmental Influences Measured by Epigenetic Clock and Vulnerability Components at Birth Impact Clinical ASD Heterogeneity.Genes (Basel)2021
32439708<i>Plasmodium vivax</i> spleen-dependent genes encode antigens associated with cytoadhesion and clinical protection.Proc Natl Acad Sci U S A2020
30959844The Primary Antisense Transcriptome of <i>Halobacterium salinarum</i> NRC-1.Genes (Basel)2019
31146720Lineage relationship between prostate adenocarcinoma and small cell carcinoma.BMC Cancer2019
30175688Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea.RNA Biol2018
28870994Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia.J Endocrinol2017
26773436Conversion of Prostate Adenocarcinoma to Small Cell Carcinoma-Like by Reprogramming.J Cell Physiol2016
27604469An expanded evaluation of protein function prediction methods shows an improvement in accuracy.Genome Biol2016
25404182Reprogramming of prostate cancer cells--technical challenges.Curr Urol Rep2015
26306723Processing of voided urine for prostate cancer RNA biomarker analysis.Prostate2015
26207740A Methodology for the Development of RESTful Semantic Web Services for Gene Expression Analysis.PLoS One2015
25622605A metabolomic protocol for plant systematics by matrix-assisted laser-desorption/ionization time-of flight mass spectrometry.Anal Chim Acta2015
25757547SIFTER-T: a scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation.Biotechniques2015
25806405Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea.RNA Biol2015
24443383ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics.Bioinformatics2014
25573029RNA-sequencing analysis of Trichophyton rubrum transcriptome in response to sublethal doses of acriflavine.BMC Genomics2014
25238539Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life.PLoS One2014
24671623Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing.Nat Prod Rep2014
23440596Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate.Cancer Microenviron2013
24341380Semantic integration of gene expression analysis tools and data sources using software connectors.BMC Genomics2013
22427119Bladder expression of CD cell surface antigens and cell-type-specific transcriptomes.Cell Tissue Res2012
23095840A UML profile for the OBO relation ontology.BMC Genomics2012
22314551Reprogramming of prostate cancer-associated stromal cells to embryonic stem-like.Prostate2012
22387760In silico identification of conserved intercoding sequences in Leishmania genomes: unraveling putative cis-regulatory elements.Mol Biochem Parasitol2012
21505567Differential Inductive Signaling of CD90 Prostate Cancer-Associated Fibroblasts Compared to Normal Tissue Stromal Mesenchyme Cells.Cancer Microenviron2011
22180073Combining P values to improve classification of differential gene expression in the HTself software.Genet Mol Res2011
21605402Lineage relationship of prostate cancer cell types based on gene expression.BMC Med Genomics2011
21691740Insights on PRAME and osteosarcoma by means of gene expression profiling.J Orthop Sci2011
20353576ProbFAST: Probabilistic functional analysis system tool.BMC Bioinformatics2010
22112474Stromal-epithelial interactions in early neoplasia.Cancer Biomark2010
19029902Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans.Nat Immunol2009
20021671Gene expression relationship between prostate cancer cells of Gleason 3, 4 and normal epithelial cells as revealed by cell type-specific transcriptomes.BMC Cancer2009
19737398Gene expression down-regulation in CD90+ prostate tumor-associated stromal cells involves potential organ-specific genes.BMC Cancer2009
19455603Temporal expression profiling of the effects of secreted factors from prostate stromal cells on embryonal carcinoma stem cells.Prostate2009
19098129Global gene expression analysis during germination in the chytridiomycete Blastocladiella emersonii.Eukaryot Cell2009
19302712Sugarcane genes associated with sucrose content.BMC Genomics2009
19036639Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily.Trends Parasitol2009
18223091The iron stimulon of Xylella fastidiosa includes genes for type IV pilus and colicin V-like bacteriocins.J Bacteriol2008
19072254Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling.Rejuvenation Res2008
17355627Signal transduction-related responses to phytohormones and environmental challenges in sugarcane.BMC Genomics2007
17935624ProbCD: enrichment analysis accounting for categorization uncertainty.BMC Bioinformatics2007
17896376Multisite fMRI reproducibility of a motor task using identical MR systems.J Magn Reson Imaging2007
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Collaborators

Lawrence D True
University of Washington School of Medicine
Co-authored papers 4
Nitin S Baliga
Institute for Systems Biology
Co-authored papers 3
Ilya Shmulevich
Institute for Systems Biology
Co-authored papers 3
Robert L Vessella
University of Washington
Co-authored papers 3
Alan Aderem
Seattle Children's Research Institute
Co-authored papers 2
Wilson A Silva
Ribeirao Preto Medical School - University of Sao Paulo
Co-authored papers 2
Danillo C Almeida-E-Silva
University of Sao Paulo
Co-authored papers 2
Helder I Nakaya
Co-authored papers 2
Bruz Marzolf
Co-authored papers 2
Christopher Funk
University of Colorado School of Medicine
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Royal Holloway University of London
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Universita degli Studi di Milano
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Vinca Institute of Nuclear Sciences, The University of Belgrade
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AC Camargo Cancer Center
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Instituto de Genetica Medica y Molecular (INGEMM), Hospital Universitario La Paz
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University of Lausanne
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Kai Hakala
University of Turku
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Domenico Cozzetto
Imperial College London
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Amos Stern
Life Science Institute
Co-authored papers 1
Shanshan Zhang
Temple University
Co-authored papers 1
Marina Marcet-Houben
Institute for Research in Biomedicine (IRB)
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Hans J Vogel
University of Calgary
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Pooya Zakeri
Aarhus University
Co-authored papers 1
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
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Ulrike Kusebauch
Institute for Systems Biology
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Jo??o Carlos Sampaio G??es
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Release 1.2