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Author Details

Steven E Brenner
University of California berkeley
1994
168
62
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36631975A rust-fungus Nudix hydrolase effector decaps mRNA in vitro and interferes with plant immune pathways.New Phytol2023
36631975A rust-fungus Nudix hydrolase effector decaps mRNA in vitro and interferes with plant immune pathways.New Phytol2023
37443081ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden.Genome Med2023
36541007Biomedical research in the Cloud: considerations for researchers and organizations moving to (or adding) cloud computing resources.Pac Symp Biocomput2023
36541000Session Introduction: TOWARDS ETHICAL BIOMEDICAL INFORMATICS: LEARNING FROM OLELO NOEAU, HAWAIIAN PROVERBS.Pac Symp Biocomput2023
37443081ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden.Genome Med2023
36541007Biomedical research in the Cloud: considerations for researchers and organizations moving to (or adding) cloud computing resources.Pac Symp Biocomput2023
36541000Session Introduction: TOWARDS ETHICAL BIOMEDICAL INFORMATICS: LEARNING FROM OLELO NOEAU, HAWAIIAN PROVERBS.Pac Symp Biocomput2023
35032432StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.Am J Hum Genet2022
35967429Investigation of the causal etiology in a patient with T-B+NK+ immunodeficiency.Front Immunol2022
35838066Newborn screening for neurodevelopmental diseases: Are we there yet?Am J Med Genet C Semin Med Genet2022
35032432StrVCTVRE: A supervised learning method to predict the pathogenicity of human genome structural variants.Am J Hum Genet2022
34850923SCOPe: improvements to the structural classification of proteins - extended database to facilitate variant interpretation and machine learning.Nucleic Acids Res2022
34890151Precision Medicine: Using Artificial Intelligence to Improve Diagnostics and Healthcare.Pac Symp Biocomput2022
35838066Newborn screening for neurodevelopmental diseases: Are we there yet?Am J Med Genet C Semin Med Genet2022
35967429Investigation of the causal etiology in a patient with T-B+NK+ immunodeficiency.Front Immunol2022
34890151Precision Medicine: Using Artificial Intelligence to Improve Diagnostics and Healthcare.Pac Symp Biocomput2022
34850923SCOPe: improvements to the structural classification of proteins - extended database to facilitate variant interpretation and machine learning.Nucleic Acids Res2022
34192540Revealing molecular pathways for cancer cell fitness through a genetic screen of the cancer translatome.Cell Rep2021
33798442Opportunities and challenges for the computational interpretation of rare variation in clinically important genes.Am J Hum Genet2021
34192540Revealing molecular pathways for cancer cell fitness through a genetic screen of the cancer translatome.Cell Rep2021
34556655Application of full-genome analysis to diagnose rare monogenic disorders.NPJ Genom Med2021
34642307Publisher Correction: Application of full-genome analysis to diagnose rare monogenic disorders.NPJ Genom Med2021
33798442Opportunities and challenges for the computational interpretation of rare variation in clinically important genes.Am J Hum Genet2021
34556655Application of full-genome analysis to diagnose rare monogenic disorders.NPJ Genom Med2021
34642307Publisher Correction: Application of full-genome analysis to diagnose rare monogenic disorders.NPJ Genom Med2021
32778825The role of exome sequencing in newborn screening for inborn errors of metabolism.Nat Med2020
31797643Navigating ethical quandaries with the privacy dilemma of biomedical datasets.Pac Symp Biocomput2020
32802992Genomic Analysis of Historical Cases with Positive Newborn Screens for Short-Chain Acyl-CoA Dehydrogenase Deficiency Shows That a Validated Second-Tier Biochemical Test Can Replace Future Sequencing.Int J Neonatal Screen2020
32778825The role of exome sequencing in newborn screening for inborn errors of metabolism.Nat Med2020
31797643Navigating ethical quandaries with the privacy dilemma of biomedical datasets.Pac Symp Biocomput2020
32802992Genomic Analysis of Historical Cases with Positive Newborn Screens for Short-Chain Acyl-CoA Dehydrogenase Deficiency Shows That a Validated Second-Tier Biochemical Test Can Replace Future Sequencing.Int J Neonatal Screen2020
30500919SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database.Nucleic Acids Res2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
30500919SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database.Nucleic Acids Res2019
31144778Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge.Hum Mutat2019
31301157Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.Hum Mutat2019
31140652Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.Hum Mutat2019
31283070VIPdb, a genetic Variant Impact Predictor Database.Hum Mutat2019
30864339When Biology Gets Personal: Hidden Challenges of Privacy and Ethics in Biological Big Data.Pac Symp Biocomput2019
30864324Precision Medicine: Improving health through high-resolution analysis of personal data.Pac Symp Biocomput2019
31260570Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5.Hum Mutat2019
31209948Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.Hum Mutat2019
31334884Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation.Hum Mutat2019
31342580Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.Hum Mutat2019
31241222Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.Hum Mutat2019
31744546The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.Genome Biol2019
31301157Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.Hum Mutat2019
31241222Assessing the performance of in silico methods for predicting the pathogenicity of variants in the gene CHEK2, among Hispanic females with breast cancer.Hum Mutat2019
31209948Evaluating the predictions of the protein stability change upon single amino acid substitutions for the FXN CAGI5 challenge.Hum Mutat2019
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Collaborators

John-Marc Chandonia
Lawrence Berkeley National Laboratory
Co-authored papers 22
Sean D Mooney
University of Washington
Co-authored papers 16
Tim Hubbard
Co-authored papers 15
Richard E Green
Co-authored papers 14
Cyrus Chothia
Co-authored papers 13
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 11
John Moult
Institute for Bioscience and Biotechnology Research
Co-authored papers 11
Olivier Lichtarge
Baylor College of Medicine
Co-authored papers 10
Predrag Radivojac
Indiana University
Co-authored papers 10
Pier Luigi Martelli
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 10
Silvio C E Tosatto
University of Padova
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Castrense Savojardo
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 7
Angela Brooks-Wilson
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Roger A Hoskins
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Yana Bromberg
Rutgers University
Co-authored papers 7
Marco Blanchette
Stowers Institute for Medical Research
Co-authored papers 7
Donald C Rio
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Liana F Lareau
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Michael Levitt
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Julian Gough
Medical Research Council Laboratory of Molecular Biology
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Marco Carraro
Hematology and Clinical Immunology Unit, University of Padova
Co-authored papers 6
Carlo Ferrari
University of Padua
Co-authored papers 6
Iddo Friedberg
Iowa State University
Co-authored papers 5
Brenton R Graveley
Co-authored papers 5
Yuxiang Jiang
Indiana University
Co-authored papers 5
Manuel Giollo
University of Padua
Co-authored papers 5
Pui-Yan Kwok
Cardiovascular Research Institute, University of California San Francisco
Co-authored papers 5
Rachel Karchin
Johns Hopkins University
Co-authored papers 5
David A W Soergel
University of California berkeley
Co-authored papers 4
Peter J Bickel
Co-authored papers 4
Release 1.2