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Author Details

Jo??o C Setubal
Chemistry Institute, Universidade de Sao Paulo - USP
2000
154
48
PMIDPaper TitleJournal TitlePublished Year
36608168Anti-Trypanosoma cruzi antibody profiling in patients with Chagas disease treated with benznidazole assessed by genome phage display.PLoS Negl Trop Dis2023
37964271COVID-19 induces more pronounced extracellular matrix deposition than other causes of ARDS.Respir Res2023
37903895Co-carriage of Plasmid NDM and Chromosomal KPC in Klebsiella pneumoniae ST255 Human Wound Isolate in Brazil.Curr Microbiol2023
37951618The Raphidiopsis (= Cylindrospermopsis) raciborskii pangenome updated: Two new metagenome-assembled genomes from the South American clade.Harmful Algae2023
37213234Oxygen-induced pathological angiogenesis promotes intense lipid synthesis and remodeling in the retina.iScience2023
37209300A novel BLUF photoreceptor modulates the Xanthomonas citri subsp. citri-host plant interaction.Photochem Photobiol Sci2023
37264385Characterization of metagenome-assembled genomes from the International Space Station.Microbiome2023
34989245Characterization and <i>in vitro</i> testing of newly isolated lytic bacteriophages for the biocontrol of <i>Pseudomonas aeruginosa</i>.Future Microbiol2022
35675015Diversity assessment of photosynthesizers: comparative analysis of pre-cultivated and natural microbiome of sediments from Cerrado biome in Maranhão, Brazil.Environ Sci Pollut Res Int2022
35762789Genomic Characterization of <i>Bacillus safensis</i> Isolated from Mine Tailings in Peru and Evaluation of Its Cyanide-Degrading Enzyme CynD.Appl Environ Microbiol2022
35630358Comparative Genomics of <i>Xylella fastidiosa</i> Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems.Microorganisms2022
35567709Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma.Cell Oncol (Dordr)2022
35421196Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans.PLoS One2022
36793881vHULK, a New Tool for Bacteriophage Host Prediction Based on Annotated Genomic Features and Neural Networks.Phage (New Rochelle)2022
36144328Genomic Characterization of <i>Salmonella</i> Typhimurium Isolated from Guinea Pigs with Salmonellosis in Lima, Peru.Microorganisms2022
36027872Diffuse alveolar damage patterns reflect the immunological and molecular heterogeneity in fatal COVID-19.EBioMedicine2022
35880493<i>Pseudomonas</i>-tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield.Future Microbiol2022
35220042Short-chain fatty acid acetate triggers antiviral response mediated by RIG-I in cells from infants with respiratory syncytial virus bronchiolitis.EBioMedicine2022
35181506New insights into plant natriuretic peptide evolution: From the lysogenic conversion in Xanthomonas to the lateral transfer to the whitefly Bemisia tabaci.Gene2022
35090189Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta, Gracilariales).J Phycol2022
35198912Longitudinal 16S rRNA gut microbiota data of infant triplets show partial susceptibility to host genetics.iScience2022
33452291Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems.Sci Rep2021
33845354Transcriptional signatures underlying dynamic phenotypic switching and novel disease biomarkers in a linear cellular model of melanoma progression.Neoplasia2021
33750302Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection.BMC Genomics2021
35059016Metagenome-assembled genomes: concepts, analogies, and challenges.Biophys Rev2021
34806047Protocol for design, construction, and selection of genome phage (gPhage) display libraries.STAR Protoc2021
34390574An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets.Genome Biol Evol2021
34507539Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions.BMC Genomics2021
34018688Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis.Environ Microbiol Rep2021
34351231Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing.Microbiol Resour Announc2021
34178670Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction.Front Oncol2021
34177843Genomic Characterization of <i>mcr-1.1</i>-Producing <i>Escherichia coli</i> Recovered From Human Infections in São Paulo, Brazil.Front Microbiol2021
34122072Circulating Plasma miRNA and Clinical/Hemodynamic Characteristics Provide Additional Predictive Information About Acute Pulmonary Thromboembolism, Chronic Thromboembolic Pulmonary Hypertension and Idiopathic Pulmonary Hypertension.Front Pharmacol2021
34089784A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence.Genomics2021
34261528Correction to: A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.Microbiome2021
34142048A refined genome phage display methodology delineates the human antibody response in patients with Chagas disease.iScience2021
34112246A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome.Microbiome2021
32252805Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios.Microbiome2020
31973130Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission.Nutrients2020
33362871Editorial: Computational Methods for Microbiome Analysis.Front Genet2020
33211762Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol.PLoS One2020
33151992Complete genome sequence and analysis of Alcaligenes faecalis strain Mc250, a new potential plant bioinoculant.PLoS One2020
32882837Tributyrin Attenuates Metabolic and Inflammatory Changes Associated with Obesity through a GPR109A-Dependent Mechanism.Cells2020
32477295Global Distribution and Evolution of <i>Mycobacterium bovis</i> Lineages.Front Microbiol2020
32520631High-Quality Draft Genome Sequence Resources of Eight <i>Xylella fastidiosa</i> Strains Isolated from Citrus, Coffee, Plum, and Hibiscus in South America.Phytopathology2020
30504211Molecular Adaptations of Bacterial Mercuric Reductase to the Hypersaline Kebrit Deep in the Red Sea.Appl Environ Microbiol2019
31846472A transcriptome-based signature of pathological angiogenesis predicts breast cancer patient survival.PLoS Genet2019
31784663Serratia liquefaciens FG3 isolated from a metallophyte plant sheds light on the evolution and mechanisms of adaptive traits in extreme environments.Sci Rep2019
31638901PlantSimLab - a modeling and simulation web tool for plant biologists.BMC Bioinformatics2019
31664237Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation.Nat Med2019
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Collaborators

A.C. Camargo Cancer Center
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Institute of Chemistry, University of Sao Paulo
Co-authored papers 8
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Oregon State University
Co-authored papers 6
Rutgers Cancer Institute of New Jersey
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University of Hull
Co-authored papers 5
Rutgers Cancer Institute of New Jersey
Co-authored papers 5
University of Chicago
Co-authored papers 5
A.C. Camargo Cancer Center
Co-authored papers 5
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AC Camargo Cancer Center
Co-authored papers 4
Institute of Chemistry, University of Sao Paulo
Co-authored papers 4
Cornell University
Co-authored papers 3
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University of Wurzburg
Co-authored papers 3
Great Lakes Bioenergy Research Center, the University of Wisconsin-Madison
Co-authored papers 3
Macquarie University
Co-authored papers 3
Wellcome Sanger Institute
Co-authored papers 3
Rutgers Cancer Institute of New Jersey
Co-authored papers 2
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Harvard Medical School
Co-authored papers 2
Georgia Institute of Technology
Co-authored papers 2
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Hospital Sirio-Libanes
Co-authored papers 2
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 2
Kurume University School of Medicine
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Institute of Chemistry, University of Sao Paulo
Co-authored papers 2