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Author Details

Laura I Furlong
Hospital del Mar Research Institute (IMIM), Pompeu Fabra University (UPF)
2000
78
28
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36895646Identifying multiscale translational safety biomarkers using a network-based systems approach.iScience2023
35816382Exploring the Association of Cancer and Depression in Electronic Health Records: Combining Encoded Diagnosis and Mining Free-Text Clinical Notes.JMIR Cancer2022
33185649A system-level analysis of patient disease trajectories based on clinical, phenotypic and molecular similarities.Bioinformatics2021
33795014Comorbidity between Alzheimer's disease and major depression: a behavioural and transcriptomic characterization study in mice.Alzheimers Res Ther2021
33800393The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives.Pharmaceuticals (Basel)2021
34626214The human hepatocyte TXG-MAPr: gene co-expression network modules to support mechanism-based risk assessment.Arch Toxicol2021
34136095The DisGeNET cytoscape app: Exploring and visualizing disease genomics data.Comput Struct Biotechnol J2021
33435983An ensemble learning approach for modeling the systems biology of drug-induced injury.Biol Direct2021
32371892COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.Sci Data2020
34367618The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research.F1000Res2020
31909603Quantitative Systems Toxicology Modeling To Address Key Safety Questions in Drug Development: A Focus of the TransQST Consortium.Chem Res Toxicol2020
31680165The DisGeNET knowledge platform for disease genomics: 2019 update.Nucleic Acids Res2020
33337338Evaluating Behavioral and Linguistic Changes During Drug Treatment for Depression Using Tweets in Spanish: Pairwise Comparison Study.J Med Internet Res2020
32705231Identification of early stage recurrence endometrial cancer biomarkers using bioinformatics tools.Oncol Rep2020
32678106Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.Sci Data2020
32570516Clinical-Based and Expert Selection of Terms Related to Depression for Twitter Streaming and Language Analysis.Stud Health Technol Inform2020
30689768Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets.Bioinformatics2019
30229903Pancreatic cancer and autoimmune diseases: An association sustained by computational and epidemiological case-control approaches.Int J Cancer2019
31250832Detecting Signs of Depression in Tweets in Spanish: Behavioral and Linguistic Analysis.J Med Internet Res2019
30851278GUILDify v2.0: A Tool to Identify Molecular Networks Underlying Human Diseases, Their Comorbidities and Their Druggable Targets.J Mol Biol2019
31169290ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer.Database (Oxford)2019
30343952The BIOMEPOC Project: Personalized Biomarkers and Clinical Profiles in Chronic Obstructive Pulmonary Disease.Arch Bronconeumol (Engl Ed)2019
29267850Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API.Bioinformatics2018
29932108Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology.Pharmaceuticals (Basel)2018
30205360In silico models in drug development: where we are.Curr Opin Pharmacol2018
29897411comoRbidity: an R package for the systematic analysis of disease comorbidities.Bioinformatics2018
30319692Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response.Front Genet2018
30515189Embracing the Dark Side: Computational Approaches to Unveil the Functionality of Genes Lacking Biological Annotation in Drug-Induced Liver Injury.Front Genet2018
29523868Identifying temporal patterns in patient disease trajectories using dynamic time warping: A population-based study.Sci Rep2018
27682981Identification of a Novel Human E-Cadherin Splice Variant and Assessment of Its Effects Upon EMT-Related Events.J Cell Physiol2017
28383714A systems approach identifies time-dependent associations of multimorbidities with pancreatic cancer risk.Ann Oncol2017
28423789Using Electronic Health Records to Assess Depression and Cancer Comorbidities.Stud Health Technol Inform2017
28961763psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes.Bioinformatics2017
29220439Text mining and expert curation to develop a database on psychiatric diseases and their genes.Database (Oxford)2017
28740175Genetic and functional characterization of disease associations explains comorbidity.Sci Rep2017
27924018DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants.Nucleic Acids Res2017
27080396Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing.Sci Rep2016
26674224CDH1/E-cadherin and solid tumors. An updated gene-disease association analysis using bioinformatics tools.Comput Biol Chem2016
27774140Open PHACTS computational protocols for <i>in silico</i> target validation of cellular phenotypic screens: knowing the knowns.Medchemcomm2016
27153650DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases.Bioinformatics2016
27307137Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.Database (Oxford)2016
27071899MedBioinformatics: Developing Integrative Bioinformatics Applications for Personalized Medicine.Stud Health Technol Inform2016
27087308A crowdsourcing workflow for extracting chemical-induced disease relations from free text.Database (Oxford)2016
25531178Personalized respiratory medicine: exploring the horizon, addressing the issues. Summary of a BRN-AJRCCM workshop held in Barcelona on June 12, 2014.Am J Respir Crit Care Med2015
26250499Molecular and clinical diseasome of comorbidities in exacerbated COPD patients.Eur Respir J2015
25886734Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research.BMC Bioinformatics2015
25856434Mining the modular structure of protein interaction networks.PLoS One2015
25877637DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.Database (Oxford)2015
25991136Reuse of EHRs to Support Clinical Research in a Hospital of Reference.Stud Health Technol Inform2015
25964630PsyGeNET: a knowledge platform on psychiatric disorders and their genes.Bioinformatics2015
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Collaborators

Ferran Sanz
Hospital del Mar Medical Research Institute (IMIM), Pompeu Fabra University
Co-authored papers 43
Alba Guti??rrez-Sacrist??n
Harvard Medical School
Co-authored papers 13
Miguel A Mayer
Hospital del Mar Medical Research Institute
Co-authored papers 13
Jan A Kors
Erasmus MC - University Medical Center Rotterdam
Co-authored papers 7
N??ria Queralt-Rosinach
Leiden University Medical Center
Co-authored papers 7
Erik M van Mulligen
Erasmus University Medical Center
Co-authored papers 7
Baldo Oliva
Universitat Pompeu Fabra
Co-authored papers 6
Paul Avillach
Harvard Medical School
Co-authored papers 5
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 5
Scott Boyer
Swedish Toxicology Sciences Research Center, Karolinska Institutet
Co-authored papers 5
Jos?? Lu??s Oliveira
University of Aveiro
Co-authored papers 5
Johan van der Lei
Erasmus Medical Center
Co-authored papers 5
Joaquim Gea
Hospital del Mar - IMIM
Co-authored papers 4
Martin Hofmann-Apitius
Co-authored papers 4
Solène Grosdidier
Co-authored papers 4
Charles Auffray
European Institute for Systems Biology and Medicine
Co-authored papers 3
Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
Co-authored papers 3
Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 3
Narcis Fernandez-Fuentes
Institute of Biological, Aberystwyth University
Co-authored papers 3
Chris T Evelo
Maastricht University
Co-authored papers 3
Christopher J O Baker
University of New Brunswick
Co-authored papers 2
Montserrat Cases
Hospital del Mar Medical Research Institute (IMIM), Universitat Pompeu Fabra
Co-authored papers 2
Marc Gillespie
Ontario Institute for Cancer Research
Co-authored papers 2
Joan Albanell
Hospital del Mar Research Institute
Co-authored papers 2
Reinhard Schneider
Co-authored papers 2
Salvador Capella-Gutierrez
Spanish National Bioinformatics Institute (INB/ELIXIR-ES)
Co-authored papers 2
Abel Gonzalez-Perez
Universitat Pompeu Fabra
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N??ria Malats
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