Skip to Main Content

Author Details

Anna Ritz
Reed College
2007
30
12
PMIDPaper TitleJournal TitlePublished Year
35950958Transformer Neural Networks for Protein Family and Interaction Prediction Tasks.J Comput Biol2023
37860106Identification of disease modules using higher-order network structure.Bioinform Adv2023
37276024<i>Special Issue</i> Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022).J Comput Biol2023
36862510Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms.J Comput Biol2023
34890150Reconciling Signaling Pathway Databases with Network Topologies.Pac Symp Biocomput2022
34264934Ten simple rules for attending your first conference.PLoS Comput Biol2021
34037782Graphery: interactive tutorials for biological network algorithms.Nucleic Acids Res2021
34095877Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma.Cell Rep Med2021
31397844MsPAC: a tool for haplotype-phased structural variant detection.Bioinformatics2020
31750900Distance measures for tumor evolutionary trees.Bioinformatics2020
32816624The <i>Drosophila melanogaster</i> Rab GAP RN-tre cross-talks with the Rho1 signaling pathway to regulate nonmuscle myosin II localization and function.Mol Biol Cell2020
31216978Network-based prediction of polygenic disease genes involved in cell motility.BMC Bioinformatics2019
31787091Integrating protein localization with automated signaling pathway reconstruction.BMC Bioinformatics2019
30176023A Cell-based Assay to Investigate Non-muscle Myosin II Contractility via the Folded-gastrulation Signaling Pathway in Drosophila S2R+ Cells.J Vis Exp2018
29138276Metabolic reprogramming ensures cancer cell survival despite oncogenic signaling blockade.Genes Dev2017
28991726Pathway Analysis with Signaling Hypergraphs.IEEE/ACM Trans Comput Biol Bioinform2017
28957495GraphSpace: stimulating interdisciplinary collaborations in network biology.Bioinformatics2017
28725467Pathways on demand: automated reconstruction of human signaling networks.NPJ Syst Biol Appl2016
28731481Corrigendum: Pathway on demand: automated reconstruction of human signaling networks.NPJ Syst Biol Appl2016
24857424Signaling hypergraphs.Trends Biotechnol2014
25355789Characterization of structural variants with single molecule and hybrid sequencing approaches.Bioinformatics2014
22537039Reconstructing cancer genomes from paired-end sequencing data.BMC Bioinformatics2012
23071622Quantitative phosphoproteomics reveals SLP-76 dependent regulation of PAG and Src family kinases in T cells.PLoS One2012
21510904Detection of recurrent rearrangement breakpoints from copy number data.BMC Bioinformatics2011
21781307Integrated genomics of ovarian xenograft tumor progression and chemotherapy response.BMC Cancer2011
20378554Structural variation analysis with strobe reads.Bioinformatics2010
20975128Gremlin: an interactive visualization model for analyzing genomic rearrangements.IEEE Trans Vis Comput Graph2010
18996944Discovery of phosphorylation motif mixtures in phosphoproteomics data.Bioinformatics2009
19605366A new approach for quantitative phosphoproteomic dissection of signaling pathways applied to T cell receptor activation.Mol Cell Proteomics2009
17947660Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.J Immunol2007
  • 1 - 30 of 30

Recommended Authors

Daniel E Carlin
University of California San Diego
Career Start Year 2013
Number of shared co-authors 1
Jian Peng
University of Illinois
Career Start Year 2009
Number of shared co-authors 0
Kahn Rhrissorrakrai
T.J. Watson Research Center
Career Start Year 2008
Number of shared co-authors 0
Atanas Kamburov
Broad Institute of Harvard and MIT
Career Start Year 2007
Number of shared co-authors 0
Anthony Gitter
University of Wisconsin
Career Start Year 2007
Number of shared co-authors 0
Janusz Dutkowski
Data4Cure Inc.
Career Start Year 2007
Number of shared co-authors 0
Dongxiao Zhu
Wayne State University
Career Start Year 2005
Number of shared co-authors 0
Avi Ma'ayan
Icahn School of Medicine at Mount Sinai
Career Start Year 2005
Number of shared co-authors 1
Andrey Sivachenko
Cystic Fibrosis Foundation
Career Start Year 2003
Number of shared co-authors 0
Quaid Morris
Sloan Kettering Institute
Career Start Year 2003
Number of shared co-authors 0
Roland Krause
University of Luxembourg
Career Start Year 2002
Number of shared co-authors 0
Max Kotlyar
Schroeder Arthritis Institute
Career Start Year 2002
Number of shared co-authors 0
Rune Linding
Humboldt-Universitat zu Berlin
Career Start Year 2002
Number of shared co-authors 1
Haiyuan Yu
Weill Institute for Cell and Molecular Biology, Cornell University
Career Start Year 2001
Number of shared co-authors 0
Olga G Troyanskaya
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Career Start Year 2001
Number of shared co-authors 0
Joshua M Stuart
University of California at Santa Cruz
Career Start Year 2000
Number of shared co-authors 4
Roded Sharan
Tel Aviv University
Career Start Year 2000
Number of shared co-authors 1
Gary D Bader
University of Toronto
Career Start Year 2000
Number of shared co-authors 1
Igor Jurisica
Schroeder Arthritis Institute
Career Start Year 1998
Number of shared co-authors 1
Lars Juhl Jensen
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Career Start Year 1998
Number of shared co-authors 0
Trey Ideker (CM4AI)
University of California San Diego
Career Start Year 1996
Number of shared co-authors 1
Ron Shamir
Tel Aviv University
Career Start Year 1995
Number of shared co-authors 1
Bonnie Berger
Massachusetts Institute of Technology
Career Start Year 1994
Number of shared co-authors 0
Dennis Shasha
Courant Institute of Mathematical Sciences, New York University
Career Start Year 1994
Number of shared co-authors 0
Ioannis Xenarios
University of Lausanne
Career Start Year 1994
Number of shared co-authors 0
Joel S Bader
Johns Hopkins University
Career Start Year 1993
Number of shared co-authors 0
Andrea Califano
Columbia University
Career Start Year 1993
Number of shared co-authors 1
Edward M Marcotte
University of Texas
Career Start Year 1993
Number of shared co-authors 1
Robert Gentleman
Center for Computational Biomedicine, Harvard Medical School
Career Start Year 1991
Number of shared co-authors 0
Mark Gerstein
Yale University
Career Start Year 1991
Number of shared co-authors 6

Collaborators

Benjamin J Raphael
Princeton University
Co-authored papers 10
Tanusya M Murali
Yong Loo Lin School of Medicine, National University of Singapore
Co-authored papers 5
Ali Bashir
Google Accelerated Science Team, Google Inc
Co-authored papers 3
Thomas J George
UF Health Cancer Center
Co-authored papers 1
Daniel K Nomura
University of California berkeley
Co-authored papers 1
Niema Moshiri
Bonita Vista High School, University of California San Diego, University of California, San Diego
Co-authored papers 1
Laura M Heiser
Oregon Health Sciences University
Co-authored papers 1
Iman Hajirasouliha
Institute for Computational Biomedicine
Co-authored papers 1
Getiria Onsongo
Macalester College
Co-authored papers 1
Colin C Collins
University of British Columbia
Co-authored papers 1
George V Thomas
Knight Cancer Institute, Oregon Health and Science University
Co-authored papers 1
Oscar L Rodriguez
University of Louisville School of Medicine
Co-authored papers 1
Sergei Maslov
University of Illinois Urbana-Champaign
Co-authored papers 1
Elizabeth Leininger
New College of Florida
Co-authored papers 1
Kelly Neiles
St. Mary's College of Maryland
Co-authored papers 1
Jeffrey W Tyner
Oregon Health & Science University School of Medicine
Co-authored papers 1
Kelly A Shaw
Centers for Disease Control and Prevention
Co-authored papers 1
Valerie B O'Donnell
Co-authored papers 1
Release 1.2