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Author Details

Emily S Boja
Office of Cancer Clinical Proteomics Research, National Cancer Institute
2000
66
34
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36470426Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling.J Biol Chem2023
36470426Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling.J Biol Chem2023
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
35720974PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.Cell Genom2022
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
34036290A community effort to identify and correct mislabeled samples in proteogenomic studies.Patterns (N Y)2021
33417831Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.Cancer Cell2021
34858420Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens.Front Immunol2021
34671754Targeted mass spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP Kinase, and AKT signaling.Cell Rep Methods2021
33577785Proteogenomic and metabolomic characterization of human glioblastoma.Cancer Cell2021
34858420Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens.Front Immunol2021
34671754Targeted mass spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP Kinase, and AKT signaling.Cell Rep Methods2021
34036290A community effort to identify and correct mislabeled samples in proteogenomic studies.Patterns (N Y)2021
32529193Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32058701Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.Anal Chem2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
32529193Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32954372Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
32058701Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.Anal Chem2020
31923397Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2020
32954372Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.Cell Rep Med2020
31467290A dataset describing a suite of novel antibody reagents for the RAS signaling network.Sci Data2019
31585088Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
31730861Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
31467290A dataset describing a suite of novel antibody reagents for the RAS signaling network.Sci Data2019
31730861Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
31675502Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.Cell2019
31585088Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.Cell2019
29610327Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.Proc Natl Acad Sci U S A2018
30194412Right data for right patient-a precisionFDA NCI-CPTAC Multi-omics Mislabeling Challenge.Nat Med2018
30087585Residual tissue repositories as a resource for population-based cancer proteomic studies.Clin Proteomics2018
29443976How many human proteoforms are there?Nat Chem Biol2018
29610327Precise characterization of KRAS4b proteoforms in human colorectal cells and tumors reveals mutation/modification cross-talk.Proc Natl Acad Sci U S A2018
30087585Residual tissue repositories as a resource for population-based cancer proteomic studies.Clin Proteomics2018
30194412Right data for right patient-a precisionFDA NCI-CPTAC Multi-omics Mislabeling Challenge.Nat Med2018
29443976How many human proteoforms are there?Nat Chem Biol2018
27836980Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction.Mol Cell Proteomics2017
29124938Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.J Proteome Res2017
27836980Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction.Mol Cell Proteomics2017
29124938Quality Assessments of Long-Term Quantitative Proteomic Analysis of Breast Cancer Xenograft Tissues.J Proteome Res2017
26867747Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.Methods Mol Biol2016
27372738Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.Cell2016
26867747Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays.Methods Mol Biol2016
26719571Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.Clin Chem2016
26653538Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.J Proteome Res2016
26503891Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts.Mol Cell Proteomics2016
26653538Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.J Proteome Res2016
26503891Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts.Mol Cell Proteomics2016
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Collaborators

Office of Cancer Clinical Proteomics Research, National Cancer Institute
Co-authored papers 41
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Co-authored papers 19
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Baylor College of Medicine
Co-authored papers 13
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Co-authored papers 12
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Oregon Health and Science University
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Broad Institute of MIT and Harvard
Co-authored papers 9
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McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 8
Pacific Northwest National Laboratory
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 6
Washington University in St Louis
Co-authored papers 6
Brigham Young University
Co-authored papers 6
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Institute for Systems Genetics, NYU Grossman School of Medicine
Co-authored papers 6
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