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Author Details

Carrie A Davis
Stanford University
2000
38
31
PMIDPaper TitleJournal TitlePublished Year
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32759341A limited set of transcriptional programs define major cell types.Genome Res2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32759341A limited set of transcriptional programs define major cell types.Genome Res2020
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
29126249The Encyclopedia of DNA elements (ENCODE): data portal update.Nucleic Acids Res2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
29688363Prevention of data duplication for high throughput sequencing repositories.Database (Oxford)2018
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28624496Effect of fentanyl on the induction dose and minimum infusion rate of propofol preventing movement in dogs.Vet Anaesth Analg2017
29106417High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Nat Genet2017
29106417High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Nat Genet2017
28624496Effect of fentanyl on the induction dose and minimum infusion rate of propofol preventing movement in dogs.Vet Anaesth Analg2017
27107712A benchmark for RNA-seq quantification pipelines.Genome Biol2016
27391956Gene-specific patterns of expression variation across organs and species.Genome Biol2016
27107712A benchmark for RNA-seq quantification pipelines.Genome Biol2016
27215799Erratum to: A benchmark for RNA-seq quantification pipelines.Genome Biol2016
27716375Erratum to: A benchmark for RNA-seq quantification pipelines.Genome Biol2016
27716375Erratum to: A benchmark for RNA-seq quantification pipelines.Genome Biol2016
27391956Gene-specific patterns of expression variation across organs and species.Genome Biol2016
27215799Erratum to: A benchmark for RNA-seq quantification pipelines.Genome Biol2016
25582907Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.Nat Commun2015
25582907Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.Nat Commun2015
24725405Mutant p53 drives pancreatic cancer metastasis through cell-autonomous PDGF receptor β signaling.Cell2014
25413365Comparison of the transcriptional landscapes between human and mouse tissues.Proc Natl Acad Sci U S A2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
24725405Mutant p53 drives pancreatic cancer metastasis through cell-autonomous PDGF receptor β signaling.Cell2014
24670764A promoter-level mammalian expression atlas.Nature2014
24670639Diversity and dynamics of the Drosophila transcriptome.Nature2014
25164755Comparative analysis of the transcriptome across distant species.Nature2014
25413365Comparison of the transcriptional landscapes between human and mouse tissues.Proc Natl Acad Sci U S A2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
25164755Comparative analysis of the transcriptome across distant species.Nature2014
24670764A promoter-level mammalian expression atlas.Nature2014
24670639Diversity and dynamics of the Drosophila transcriptome.Nature2014
23104886STAR: ultrafast universal RNA-seq aligner.Bioinformatics2013
23104886STAR: ultrafast universal RNA-seq aligner.Bioinformatics2013
22265404Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.Cell2012
22889292An encyclopedia of mouse DNA elements (Mouse ENCODE).Genome Biol2012
22955988The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.Genome Res2012
22955978Understanding transcriptional regulation by integrative analysis of transcription factor binding data.Genome Res2012
22955974Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs.Genome Res2012
22955620Landscape of transcription in human cells.Nature2012
22484847Accurate identification of human Alu and non-Alu RNA editing sites.Nat Methods2012
22265404Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation.Cell2012
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Collaborators

Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 26
Alexander Dobin
Co-authored papers 17
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 14
Sarah Djebali
Co-authored papers 13
Brenton R Graveley
Co-authored papers 10
Michael Snyder
Stanford University
Co-authored papers 9
Ali Mortazavi
Co-authored papers 8
Dmitri D Pervouchine
Co-authored papers 8
Mark Gerstein
Yale University
Co-authored papers 7
Julien Lagarde
Co-authored papers 7
Barbara J Wold
Merkin Institute for Translational Research, California Institute of Technology
Co-authored papers 7
Jorg Drenkow
Co-authored papers 7
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 6
Alessandra Breschi
Co-authored papers 6
Brian A Williams
Co-authored papers 6
Philipp Kapranov
Co-authored papers 5
Roger A Hoskins
University of California berkeley
Co-authored papers 5
Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 5
Andrea Tanzer
Co-authored papers 5
Xintao Wei
Co-authored papers 5
Norbert Perrimon
Co-authored papers 5
Susan E Celniker
Lawrence Berkeley National Laboratory
Co-authored papers 5
Joel Rozowsky
Co-authored papers 5
Joseph W Carlson
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
Rory Johnson
Co-authored papers 4
John A Stamatoyannopoulos
Altius Institute for Biomedical Sciences
Co-authored papers 4
Kenneth H Wan
Lawrence Berkeley National Laboratory
Co-authored papers 4
Yijun Ruan
Co-authored papers 4
Ross C Hardison
Co-authored papers 4
Release 1.2