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Author Details

Youping Deng
John A. Burns School of Medicine, University of Hawaii at Manoa
1999
204
37
Jake Y. Chen (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36684445Harshening stem cell research and precision medicine: The states of human pluripotent cells stem cell repository diversity, and racial and sex differences in transcriptomes.Front Cell Dev Biol2023
37404823SARS-CoV-2 and the host-immune response.Front Immunol2023
36473671SARS-CoV-2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents.Virus Res2023
37108716Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors.Int J Mol Sci2023
36684450RSK1 and RSK2 serine/threonine kinases regulate different transcription programs in cancer.Front Cell Dev Biol2023
36684445Harshening stem cell research and precision medicine: The states of human pluripotent cells stem cell repository diversity, and racial and sex differences in transcriptomes.Front Cell Dev Biol2023
37101659SARS2Mutant: SARS-CoV-2 amino-acid mutation atlas database.NAR Genom Bioinform2023
37521042Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease.Patterns (N Y)2023
37486714A Splicing Transcriptome-Wide Association Study Identifies Candidate Altered Splicing for Prostate Cancer Risk.OMICS2023
37486714A Splicing Transcriptome-Wide Association Study Identifies Candidate Altered Splicing for Prostate Cancer Risk.OMICS2023
37521042Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease.Patterns (N Y)2023
37108716Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors.Int J Mol Sci2023
37404823SARS-CoV-2 and the host-immune response.Front Immunol2023
37101659SARS2Mutant: SARS-CoV-2 amino-acid mutation atlas database.NAR Genom Bioinform2023
36473671SARS-CoV-2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents.Virus Res2023
36684450RSK1 and RSK2 serine/threonine kinases regulate different transcription programs in cancer.Front Cell Dev Biol2023
34582894Viral Etiology of Solid Tumors and Immunotherapy.Gastroenterology2022
35390016Sulfite preservatives effects on the mouth microbiome: Changes in viability, diversity and composition of microbiota.PLoS One2022
36299999A history of the MetaSUB consortium: Tracking urban microbes around the globe.iScience2022
35898341The First Geographic Identification by Country of Sustainable Mutations of SARS-COV2 Sequence Samples: Worldwide Natural Selection Trends.bioRxiv2022
35892120Comprehensive landscape of tRNA-derived fragments in lung cancer.Mol Ther Oncolytics2022
35502304Association of Septic Shock with Mortality in Hospitalized COVID-19 Patients in Wuhan, China.Adv Virol2022
35799127RNA-Sequencing based analysis of bovine endometrium during the maternal recognition of pregnancy.BMC Genomics2022
35923310SARS-CoV-2 Non-Structural Protein 1(NSP1) Mutation Virulence and Natural Selection: Evolutionary Trends in the Six Continents.bioRxiv2022
35604830MRTF-A-mediated protection against amyloid-β-induced neuronal injury correlates with restoring autophagy via miR-1273g-3p/mTOR axis in Alzheimer models.Aging (Albany NY)2022
37396544Mitochondria-derived small RNAs as diagnostic biomarkers in lung cancer patients through a novel ratio-based expression analysis methodology.Genes Dis2022
36555339Integrated Analysis of Bulk RNA-Seq and Single-Cell RNA-Seq Unravels the Influences of SARS-CoV-2 Infections to Cancer Patients.Int J Mol Sci2022
36612607Summary of Year-One Effort of the RCMI Consortium to Enhance Research Capacity and Diversity with Data Science.Int J Environ Res Public Health2022
35064762Analysis and Performance Assessment of the Whole Genome Bisulfite Sequencing Data Workflow: Currently Available Tools and a Practical Guide to Advance DNA Methylation Studies.Small Methods2022
35047039Prognostic Factors for COVID-19 Hospitalized Patients with Preexisting Type 2 Diabetes.Int J Endocrinol2022
35085550T-cell activation decreases miRNA-15a/16 levels to promote MEK1-ERK1/2-Elk1 signaling and proliferative capacity.J Biol Chem2022
34637759Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.Environ Res2022
34582894Viral Etiology of Solid Tumors and Immunotherapy.Gastroenterology2022
35799127RNA-Sequencing based analysis of bovine endometrium during the maternal recognition of pregnancy.BMC Genomics2022
35502304Association of Septic Shock with Mortality in Hospitalized COVID-19 Patients in Wuhan, China.Adv Virol2022
35604830MRTF-A-mediated protection against amyloid-β-induced neuronal injury correlates with restoring autophagy via miR-1273g-3p/mTOR axis in Alzheimer models.Aging (Albany NY)2022
35390016Sulfite preservatives effects on the mouth microbiome: Changes in viability, diversity and composition of microbiota.PLoS One2022
37396544Mitochondria-derived small RNAs as diagnostic biomarkers in lung cancer patients through a novel ratio-based expression analysis methodology.Genes Dis2022
36555339Integrated Analysis of Bulk RNA-Seq and Single-Cell RNA-Seq Unravels the Influences of SARS-CoV-2 Infections to Cancer Patients.Int J Mol Sci2022
36612607Summary of Year-One Effort of the RCMI Consortium to Enhance Research Capacity and Diversity with Data Science.Int J Environ Res Public Health2022
35898341The First Geographic Identification by Country of Sustainable Mutations of SARS-COV2 Sequence Samples: Worldwide Natural Selection Trends.bioRxiv2022
36299999A history of the MetaSUB consortium: Tracking urban microbes around the globe.iScience2022
35923310SARS-CoV-2 Non-Structural Protein 1(NSP1) Mutation Virulence and Natural Selection: Evolutionary Trends in the Six Continents.bioRxiv2022
35892120Comprehensive landscape of tRNA-derived fragments in lung cancer.Mol Ther Oncolytics2022
35047039Prognostic Factors for COVID-19 Hospitalized Patients with Preexisting Type 2 Diabetes.Int J Endocrinol2022
35064762Analysis and Performance Assessment of the Whole Genome Bisulfite Sequencing Data Workflow: Currently Available Tools and a Practical Guide to Advance DNA Methylation Studies.Small Methods2022
35085550T-cell activation decreases miRNA-15a/16 levels to promote MEK1-ERK1/2-Elk1 signaling and proliferative capacity.J Biol Chem2022
34637759Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.Environ Res2022
33932994RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen.BMC Genomics2021
33484950Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation.Mol Metab2021
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Collaborators

Jack Y Yang
Massachusetts General Hospital and Harvard Medical School
Co-authored papers 25
Junmei Ai
Rush University Medical Center
Co-authored papers 20
Edward J Perkins
Co-authored papers 19
Tieliu Shi
Co-authored papers 14
Hamid R Arabnia
University of Georgia
Co-authored papers 11
Xin Guan
Institute of Animal Nutrition, Northeast Agricultural University
Co-authored papers 9
Chen Zhao
Co-authored papers 9
Weida Tong
National Center for Toxicological Research
Co-authored papers 8
Venkata Thodima
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Andrzej Niemierko
Massachusetts General Hospital
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Yunlong Liu
The First Affiliated Hospital of Zhengzhou University
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Ming Shi
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Fan Zhang
College of Life Sciences, ShanDong Normal University
Co-authored papers 4
Viswanath Devanarayan
Clinical Evidence Generation, Eisai Inc.
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Joshua Xu
Co-authored papers 4
Alan Keith Dunker
Center for Computational Biology, Indiana University School of Medicine
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Huixiao Hong
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Barbara Lynn Escalon
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Charles Wang
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Renee Drabier
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Pierre R Bushel
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William F Symmans
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Andreas Scherer
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 3
Brenda Y Hernandez
University of Hawaii Cancer Center
Co-authored papers 3
Lajos Pusztai
Co-authored papers 3
Susan J Brown
Kansas State University
Co-authored papers 3
Dong Xu
University of Missouri
Co-authored papers 3
Jean Thierry-Mieg
Co-authored papers 3
Yan Li
Co-authored papers 3
Emmanuel Dias-Neto
A.C. Camargo Cancer Center
Co-authored papers 3
Release 1.2