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Author Details

Jue Ruan
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
2004
66
32
PMIDPaper TitleJournal TitlePublished Year
36868220The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights.Cell2023
37553831A complete assembly of the rice Nipponbare reference genome.Mol Plant2023
37688324Multi-omics analysis reveals the evolutionary origin of diterpenoid alkaloid biosynthesis pathways in Aconitum.J Integr Plant Biol2023
35718271The First High-quality Reference Genome of Sika Deer Provides Insights into High-tannin Adaptation.Genomics Proteomics Bioinformatics2023
37452091The complete and fully-phased diploid genome of a male Han Chinese.Cell Res2023
37245652GAEP: a comprehensive genome assembly evaluating pipeline.J Genet Genomics2023
37107573Transcriptomic and Chromatin Landscape Analysis Reveals That Involvement of Pituitary Level Transcription Factors Modulate Incubation Behaviors of Magang Geese.Genes (Basel)2023
36585823High-Quality Genomes of Pangolins: Insights into the Molecular Basis of Scale Formation and Adaption to Myrmecophagous Diet.Mol Biol Evol2023
34339842A Chromosome-level Genome Assembly of Wild Castor Provides New Insights into its Adaptive Evolution in Tropical Desert.Genomics Proteomics Bioinformatics2022
37589307Chromosome-level genome and recombination map of the male buffalo.Gigascience2022
35437001The Cycas genome and the early evolution of seed plants.Nat Plants2022
35821092A super pan-genomic landscape of rice.Cell Res2022
37039117Molecular mechanisms underlying hematophagia revealed by comparative analyses of leech genomes.Gigascience2022
35038730Long-Read Genome Sequencing Provides Molecular Insights into Scavenging and Societal Complexity in Spotted Hyena Crocuta crocuta.Mol Biol Evol2022
34509700En Route to Completion: What Is An Ideal Reference Genome?Genomics Proteomics Bioinformatics2022
34135482The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution.Nat Plants2021
36824332SMARTdenovo: a <i>de novo</i> assembler using long noisy reads.GigaByte2021
33545087African lungfish genome sheds light on the vertebrate water-to-land transition.Cell2021
34785350Screening and identification of female-specific DNA sequences in octaploid sturgeon using comparative genomics with high-throughput sequencing.Genomics2021
32461609Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration.Nat Commun2020
34692087Understanding divergent domestication traits from the whole-genome sequencing of swamp- and river-buffalo populations.Natl Sci Rev2020
31819265Fast and accurate long-read assembly with wtdbg2.Nat Methods2020
32766441From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish.Sci Adv2020
32591023A genome-wide survey of copy number variations reveals an asymmetric evolution of duplicated genes in rice.BMC Biol2020
32895382Population sequencing enhances understanding of tea plant evolution.Nat Commun2020
32122301Fatty acid biosynthesis and transcriptional regulation of Stearoyl-CoA Desaturase 1 (SCD1) in buffalo milk.BMC Genet2020
32174968Comparison of Long Non-Coding RNA Expression Profiles of Cattle and Buffalo Differing in Muscle Characteristics.Front Genet2020
30664654Penaeid shrimp genome provides insights into benthic adaptation and frequent molting.Nat Commun2019
34694297Structural variation during dog domestication: insights from gray wolf and dhole genomes.Natl Sci Rev2019
31818249LRScaf: improving draft genomes using long noisy reads.BMC Genomics2019
31216035A chromosome-scale genome assembly of cucumber (Cucumis sativus L.).Gigascience2019
31406327Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.Nat Biotechnol2019
31366935Sequencing of Chinese castor lines reveals genetic signatures of selection and yield-associated loci.Nat Commun2019
30649444Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations.Mol Biol Evol2019
29718005Novel sequences, structural variations and gene presence variations of Asian cultivated rice.Sci Data2018
29695866Genomic variation in 3,010 diverse accessions of Asian cultivated rice.Nature2018
27892959novoBreak: local assembly for breakpoint detection in cancer genomes.Nat Methods2017
28530222Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq.Nat Commun2017
27980066pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping.Nucleic Acids Res2017
26932528Organization and characteristics of the major histocompatibility complex class II region in the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis).Sci Rep2016
27122023Using ultra-sensitive next generation sequencing to dissect DNA damage-induced mutagenesis.Sci Rep2016
27573208DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies.Sci Rep2016
27255201Erratum to: 'Ultra-precise detection of mutations by droplet-based amplification of circularized DNA'.BMC Genomics2016
27399969Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation.Nat Genet2016
26960407Ultra-precise detection of mutations by droplet-based amplification of circularized DNA.BMC Genomics2016
25246944Overexpression of the soybean transcription factor GmDof4 significantly enhances the lipid content of Chlorella ellipsoidea.Biotechnol Biofuels2014
23347462Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags.BMC Genomics2013
24134808Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.BMC Genomics2013
24077769The evolution of small insertions and deletions in the coding genes of Drosophila melanogaster.Mol Biol Evol2013
23962614Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing.Bioinformatics2013
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Collaborators

Huanming Yang
Experimental Research Center, China Academy of Chinese Medical Sciences
Co-authored papers 10
Jun Wang
Zhongnan Hospital of Wuhan University
Co-authored papers 8
Guojie Zhang
University of Copenhagen, Universitetsparken 15
Co-authored papers 8
Jian Wang
Institute of Medical Research, Northwestern Polytechnical University
Co-authored papers 8
Richard Durbin
University of Cambridge
Co-authored papers 5
Zechen Chong
Heersink School of Medicine, University of Alabama at Birmingham
Co-authored papers 5
Jun Yu
Beijing Institute of Genomics, Chinese Academy of Sciences
Co-authored papers 4
Heng Li
Co-authored papers 4
Yiran Guo
Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia
Co-authored papers 4
Rasmus Nielsen
Co-authored papers 2
Oliver A Ryder
Co-authored papers 2
Jean-Karim H??rich??
University of California san francisco
Co-authored papers 2
Bing Bai
Hefei National Laboratory, University of Science and Technology of China
Co-authored papers 2
David W Burt
The Roslin Institute & R(D)SVS, University of Edinburgh
Co-authored papers 2
Lachlan J M Coin
The Peter Doherty Institute for Infection and Immunity, The University of Melbourne
Co-authored papers 2
Nan Qin
and Clinical Immunology, Heinrich Heine University, University Hospital Dusseldorf
Co-authored papers 2
Changqing Zeng
Institute of Biomedical Sciences, Henan Academy of Sciences
Co-authored papers 2
Michael Inouye
Co-authored papers 1
Chris P Ponting
The University of Edinburgh
Co-authored papers 1
Kevin P White
Co-authored papers 1
Anna Y Lee
Ontario Institute for Cancer Research
Co-authored papers 1
Chengming Fan
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Co-authored papers 1
Wanding Zhou
University of Pennsylvania
Co-authored papers 1
Xian Fan
Rice University
Co-authored papers 1
Justin M Zook
National Institute of Standards and Technology
Co-authored papers 1
Yiqing Zhao
Northwestern University
Co-authored papers 1
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 1
Andy Law
The Roslin Institute, University of Edinburgh
Co-authored papers 1
Tim Fennell
Co-authored papers 1
Inna Dubchak
Lawrence Berkeley National Laboratory
Co-authored papers 1
Release 1.2