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Author Details

Cathy H Wu
Georgetown University Medical Center
1992
159
47
PMIDPaper TitleJournal TitlePublished Year
36350672InterPro in 2022.Nucleic Acids Res2023
36350672InterPro in 2022.Nucleic Acids Res2023
37022994Text mining of CHO bioprocess bibliome: Topic modeling and document classification.PLoS One2023
36681715Microevolutionary dynamics of eccDNA in Chinese hamster ovary cells grown in fed-batch cultures under control and lactate-stressed conditions.Sci Rep2023
37022994Text mining of CHO bioprocess bibliome: Topic modeling and document classification.PLoS One2023
36681715Microevolutionary dynamics of eccDNA in Chinese hamster ovary cells grown in fed-batch cultures under control and lactate-stressed conditions.Sci Rep2023
35260072Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses.BMC Plant Biol2022
35975455A knowledge graph representation learning approach to predict novel kinase-substrate interactions.Mol Omics2022
35696082iPTMnet RESTful API for Post-translational Modification Network Analysis.Methods Mol Biol2022
35260072Global analysis of switchgrass (Panicum virgatum L.) transcriptomes in response to interactive effects of drought and heat stresses.BMC Plant Biol2022
35696082iPTMnet RESTful API for Post-translational Modification Network Analysis.Methods Mol Biol2022
35975455A knowledge graph representation learning approach to predict novel kinase-substrate interactions.Mol Omics2022
33419422Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures.BMC Biotechnol2021
33727228Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance.Cancer Res2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33419422Characterization of metabolic responses, genetic variations, and microsatellite instability in ammonia-stressed CHO cells grown in fed-batch cultures.BMC Biotechnol2021
34517763TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.mBio2021
34613368COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.Bioinformatics2021
33727228Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance.Cancer Res2021
34613368COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases.Bioinformatics2021
34517763TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis.mBio2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
32395768RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.Database (Oxford)2020
32395768RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.Database (Oxford)2020
33046717Protein ontology on the semantic web for knowledge discovery.Sci Data2020
32603024Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence.Adv Biosyst2020
33046717Protein ontology on the semantic web for knowledge discovery.Sci Data2020
32603024Understanding ER+ Breast Cancer Dormancy Using Bioinspired Synthetic Matrices for Long-Term 3D Culture and Insights into Late Recurrence.Adv Biosyst2020
30736855Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition.Epigenetics Chromatin2019
30805646PIRSitePredict for protein functional site prediction using position-specific rules.Database (Oxford)2019
31069334Tunable synthetic extracellular matrices to investigate breast cancer response to biophysical and biochemical cues.APL Bioeng2019
30736855Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition.Epigenetics Chromatin2019
31361753Using distant supervision to augment manually annotated data for relation extraction.PLoS One2019
31361753Using distant supervision to augment manually annotated data for relation extraction.PLoS One2019
31069334Tunable synthetic extracellular matrices to investigate breast cancer response to biophysical and biochemical cues.APL Bioeng2019
30805646PIRSitePredict for protein functional site prediction using position-specific rules.Database (Oxford)2019
29145615iPTMnet: an integrated resource for protein post-translational modification network discovery.Nucleic Acids Res2018
30576489iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.Database (Oxford)2018
30241500Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus).BMC Genomics2018
29860481DEXTER: Disease-Expression Relation Extraction from Text.Database (Oxford)2018
30526566Automatic gene annotation using GO terms from cellular component domain.BMC Med Inform Decis Mak2018
29566671Completing sparse and disconnected protein-protein network by deep learning.BMC Bioinformatics2018
29695735Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.Sci Rep2018
29145615iPTMnet: an integrated resource for protein post-translational modification network discovery.Nucleic Acids Res2018
30241500Transcriptional profiling of liver during the critical embryo-to-hatchling transition period in the chicken (Gallus gallus).BMC Genomics2018
29860481DEXTER: Disease-Expression Relation Extraction from Text.Database (Oxford)2018
30526566Automatic gene annotation using GO terms from cellular component domain.BMC Med Inform Decis Mak2018
30576489iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.Database (Oxford)2018
29695735Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.Sci Rep2018
29566671Completing sparse and disconnected protein-protein network by deep learning.BMC Bioinformatics2018
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Collaborators

Hongzhan Huang
Co-authored papers 63
Cecilia N Arighi
University of Delaware
Co-authored papers 42
Darren A Natale
Georgetown University Medical Center
Co-authored papers 30
Karen E Ross
Co-authored papers 25
K Vijay-Shanker
Co-authored papers 25
Zhang-Zhi Hu
Co-authored papers 23
Chuming Chen
Co-authored papers 22
Winona C Barker
Co-authored papers 19
Peter B McGarvey
Co-authored papers 14
Raja Mazumder
Co-authored papers 14
Jian Zhang
Co-authored papers 14
Julie Cowart
Co-authored papers 12
Lai-Su L Yeh
Co-authored papers 12
Manabu Torii
Co-authored papers 11
Gang Li
Co-authored papers 10
Amos Bairoch
University of Geneva
Co-authored papers 9
Qinghua Wang
Co-authored papers 9
Rodrigo Lopez
Co-authored papers 9
Hongfang Liu
Mayo Clinic
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Rolf Apweiler
European Bioinformatics Institute (EMBL-EBI)
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Alex Bateman
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Jia Ren
Co-authored papers 9
Catalina O Tudor
Center for Bioinformatics and Computational Biology, University of Delaware
Co-authored papers 8
Robert D Finn
European Bioinformatics Institute
Co-authored papers 8
Baris E Suzek
Co-authored papers 8
Peer Bork
University of Wurzburg
Co-authored papers 8
Barry Smith
University at Buffalo
Co-authored papers 8
Ivica Letunic
Co-authored papers 8
Christian J A Sigrist
Co-authored papers 8
Lynette Hirschman
The MITRE Corporation
Co-authored papers 8
Release 1.2