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Author Details

Thomas R Gingeras
Stanley Institute for Cognitive Genomics
1974
160
84
PMIDPaper TitleJournal TitlePublished Year
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
37794265The status of the human gene catalogue.Nature2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36994150The status of the human gene catalogue.ArXiv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
36596869Long non-coding RNAs: definitions, functions, challenges and recommendations.Nat Rev Mol Cell Biol2023
37794265The status of the human gene catalogue.Nature2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36994150The status of the human gene catalogue.ArXiv2023
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
33400914Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.Dev Cell2021
33758256Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain.Sci Rep2021
33400914Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery.Dev Cell2021
34855479Ground tissue circuitry regulates organ complexity in maize and <i>Setaria</i>.Science2021
33758256Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain.Sci Rep2021
34855479Ground tissue circuitry regulates organ complexity in maize and <i>Setaria</i>.Science2021
32296450Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.Front Plant Sci2020
32296450Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.Front Plant Sci2020
32759341A limited set of transcriptional programs define major cell types.Genome Res2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
32609822Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment.Nucleic Acids Res2020
32609822Processing by RNase 1 forms tRNA halves and distinct Y RNA fragments in the extracellular environment.Nucleic Acids Res2020
32759341A limited set of transcriptional programs define major cell types.Genome Res2020
32728249Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2020
30918008The long noncoding RNA <i>ROCKI</i> regulates inflammatory gene expression.EMBO J2019
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
30918008The long noncoding RNA <i>ROCKI</i> regulates inflammatory gene expression.EMBO J2019
31413151Genome-wide analysis of polymerase III-transcribed <i>Alu</i> elements suggests cell-type-specific enhancer function.Genome Res2019
31645363Dynamics of microRNA expression during mouse prenatal development.Genome Res2019
31413151Genome-wide analysis of polymerase III-transcribed <i>Alu</i> elements suggests cell-type-specific enhancer function.Genome Res2019
29718481The fractured landscape of RNA-seq alignment: the default in our STARs.Nucleic Acids Res2018
29718481The fractured landscape of RNA-seq alignment: the default in our STARs.Nucleic Acids Res2018
29618663Advances, challenges, and opportunities in extracellular RNA biology: insights from the NIH exRNA Strategic Workshop.JCI Insight2018
29618663Advances, challenges, and opportunities in extracellular RNA biology: insights from the NIH exRNA Strategic Workshop.JCI Insight2018
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28479595Comparative transcriptomics in human and mouse.Nat Rev Genet2017
29260710Conserved noncoding transcription and core promoter regulatory code in early <i>Drosophila</i> development.Elife2017
29106417High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Nat Genet2017
28479595Comparative transcriptomics in human and mouse.Nat Rev Genet2017
29260710Conserved noncoding transcription and core promoter regulatory code in early <i>Drosophila</i> development.Elife2017
29106417High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Nat Genet2017
27115637Optimizing RNA-Seq Mapping with STAR.Methods Mol Biol2016
27391956Gene-specific patterns of expression variation across organs and species.Genome Biol2016
27115637Optimizing RNA-Seq Mapping with STAR.Methods Mol Biol2016
27391956Gene-specific patterns of expression variation across organs and species.Genome Biol2016
25582907Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.Nat Commun2015
25582907Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.Nat Commun2015
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Center for Epigenomics, University of California San Diego
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University of Virginia
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Center for Integrative Medical Sciences
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HudsonAlpha Institute for Biotechnology
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Stanford University.
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Altius Institute for Biomedical Sciences
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