Author details

Full Name

Rocco Moretti

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37131837	Integrating Expert Knowledge with Deep Learning Improves QSAR Models for CADD Modeling.	bioRxiv	2023
36512534	Rosetta FlexPepDock to predict peptide-MHC binding: An approach for non-canonical amino acids.	PLoS One	2022
35973423	Integrative model of the FSH receptor reveals the structural role of the flexible hinge region.	Structure	2022
33373213	Efficient Sampling of Protein Loop Regions Using Conformational Hashing Complemented with Random Coordinate Descent.	J Chem Theory Comput	2021
33705117	Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design.	Biochemistry	2021
33723038	Computationally designed peptide macrocycle inhibitors of New Delhi metallo-Î²-lactamase 1.	Proc Natl Acad Sci U S A	2021
32483333	Macromolecular modeling and design in Rosetta: recent methods and frameworks.	Nat Methods	2020
32365137	Better together: Elements of successful scientific software development in a distributed collaborative community.	PLoS Comput Biol	2020
31936129	Delineating the Molecular Basis of the Calmodulinâ¿¿bMunc13-2 Interaction by Cross-Linking/Mass Spectrometry-Evidence for a Novel CaM Binding Motif in bMunc13-2.	Cells	2020
30085373	Mono(2-ethylhexyl) phthalate (MEHP) and mono(2-ethyl-5-oxohexyl) phthalate (MEOHP) but not di(2-ethylhexyl) phthalate (DEHP) bind productively to the peroxisome proliferator-activated receptor Î³.	Rapid Commun Mass Spectrom	2019
29295930	Identification of a ubiquitin-binding interface using Rosetta and DEER.	Proc Natl Acad Sci U S A	2018
28960691	Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE).	Protein Sci	2018
27490953	Protocols for Molecular Modeling with Rosetta3 and RosettaScripts.	Biochemistry	2016
30547079	Conformational Shift of a Î²-Hairpin Peptide upon Complex Formation with an Oligo-proline Peptide Studied by Mass Spectrometry.	ChemistrySelect	2016
27094285	Rosetta and the Design of Ligand Binding Sites.	Methods Mol Biol	2016
27129207	Rearrangement of the Extracellular Domain/Extracellular Loop 1 Interface Is Critical for Thyrotropin Receptor Activation.	J Biol Chem	2016
26689263	Engineering an allosteric transcription factor to respond to new ligands.	Nat Methods	2016
23526810	Computational enzyme design.	Angew Chem Int Ed Engl	2013
23843247	Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.	Proteins	2013
23871100	Scoring functions for protein-protein interactions.	Curr Opin Struct Biol	2013
23565140	A Pareto-optimal refinement method for protein design scaffolds.	PLoS One	2013
21317292	Expanding the nucleotide and sugar 1-phosphate promiscuity of nucleotidyltransferase RmlA via directed evolution.	J Biol Chem	2011
18798210	The in vitro characterization of polyene glycosyltransferases AmphDI and NysDI.	ChemBioChem	2008
18422304	Targeted chemical wedges reveal the role of allosteric DNA modulation in protein-DNA assembly.	ACS Chemical Biology	2008
18343232	Expanding the specificity of DNA targeting by harnessing cooperative assembly.	Biochimie	2008
18387352	A comparison of sugar indicators enables a universal high-throughput sugar-1-phosphate nucleotidyltransferase assay.	Analytical Biochemistry	2008
17434871	Enhancing the latent nucleotide triphosphate flexibility of the glucose-1-phosphate thymidylyltransferase RmlA.	Journal of Biological Chemistry	2007
15781856	Temperature-sensitive protein-DNA dimerizers.	Proceedings of the National Academy of Sciences of the United States of America	2005