Author details

Full Name

Abdullah Kahraman

Affiliation

University of Zurich

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36861868	Orthopedic Management of Radial Tunnel Syndrome: A Diagnostic and Treatment Dilemma.	Eurasian J Med	2023
37123454	CanIsoNet: a database to study the functional impact of isoform switching events in diseases.	Bioinform Adv	2023
36697832	Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.	Nature	2023
36779660	Unravelling homologous recombination repair deficiency and therapeutic opportunities in soft tissue and bone sarcoma.	EMBO Mol Med	2023
36933996	Ex Vivo Drug Testing in Patient-derived Papillary Renal Cancer Cells Reveals EGFR and the BCL2 Family as Therapeutic Targets.	Eur Urol Focus	2023
34406159	Integrated Analysis Of Immunotherapy Treated Clear Cell Renal Cell Carcinomas: An Exploratory Study.	J Immunother	2022
35517855	Editorial: Alternative Splicing in Health and Disease.	Front Mol Biosci	2022
36053834	ROS1 genomic rearrangements are rare actionable drivers in microsatellite stable colorectal cancer.	Int J Cancer	2022
36007219	MTPpilot: An Interactive Software for Visualization of Next-Generation Sequencing Results in Molecular Tumor Boards.	JCO Clin Cancer Inform	2022
31266731	Tracing Clonal Dynamics Reveals that Two- and Three-dimensional Patient-derived Cell Models Capture Tumor Heterogeneity of Clear Cell Renal Cell Carcinoma.	Eur Urol Focus	2021
34888349	Probing Isoform Switching Events in Various Cancer Types: Lessons From Pan-Cancer Studies.	Front Mol Biosci	2021
34849464	Epithelial Wnt secretion drives the progression of inflammation-induced colon carcinoma in murine model.	iScience	2021
34202213	Clinicopathological and Genomic Profiles of Atypical Fibroxanthoma and Pleomorphic Dermal Sarcoma Identify Overlapping Signatures with a High Mutational Burden.	Genes (Basel)	2021
32879328	Pathogenic impact of transcript isoform switching in 1,209 cancer samples covering 27 cancer types using an isoform-specific interaction network.	Sci Rep	2020
32885145	Clonal Hematopoiesis in Hospitalized Elderly Patients With COVID-19.	Hemasphere	2020
32914035	<i>STRN</i> <i>-ALK</i> Rearranged Malignant Peritoneal Mesothelioma With Dramatic Response Following Ceritinib Treatment.	JCO Precis Oncol	2019
29072706	Measuring protein structural changes on a proteome-wide scale using limited proteolysis-coupled mass spectrometry.	Nat Protoc	2017
28232526	Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.	Science	2017
28292943	Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome.	Mol Cell Proteomics	2017
25636126	Proteomics beyond large-scale protein expression analysis.	Curr Opin Biotechnol	2015
25956653	xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints.	Nucleic Acids Res	2015
25933590	Spin trapping combined with quantitative mass spectrometry defines free radical redistribution within the oxidized hemoglobin:haptoglobin complex.	Free Radic Biol Med	2015
24639379	Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances.	Protein Sci	2014
25278959	Statistical methods for detecting differentially methylated loci and regions.	Front Genet	2014
25218519	Global analysis of protein structural changes in complex proteomes.	Nat Biotechnol	2014
24069194	Cross-link guided molecular modeling with ROSETTA.	PLoS One	2013
22984071	Structural probing of a protein phosphatase 2A network by chemical cross-linking and mass spectrometry.	Science	2012
21666267	Xwalk: computing and visualizing distances in cross-linking experiments.	Bioinformatics	2011
19927322	On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins.	Proteins	2010
20544970	Heme proteins--diversity in structural characteristics, function, and folding.	Proteins	2010
20360032	Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.	Mol Cell Proteomics	2010
17337005	Shape variation in protein binding pockets and their ligands.	J Mol Biol	2007
15374875	PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics.	Bioinformatics	2005
15728116	Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.	Bioinformatics	2005

1 - 34 of 34

Michael T Zimmermann

Medical College of Wisconsin

Career Start Year 2009

Number of shared co-authors 2

Javier A Alfaro

International Centre for Cancer Vaccine Science, University of Gdansk

Career Start Year 2008

Number of shared co-authors 0

Sira Sriswasdi

Chulalongkorn University, Thailand Center for Artificial Intelligence in Medicine

Career Start Year 2008

Number of shared co-authors 0

Eric Paquet

University of Laval

Career Start Year 2007

Number of shared co-authors 0

Arnaud Droit

Centre de Recherche du CHU de Quebec-Universite, Universite Laval

Career Start Year 2005

Number of shared co-authors 0

Tommaso Mazza

Fondazione IRCCS Casa Sollievo della Sofferenza,71013

Career Start Year 2005

Number of shared co-authors 0

Semin Lee

Ulsan National Institute of Science and Technology (UNIST)

Career Start Year 2005

Number of shared co-authors 9

Bing Zhang

Baylor College of Medicine

Career Start Year 2005

Number of shared co-authors 1

Andrey Sivachenko

Cystic Fibrosis Foundation

Career Start Year 2003

Number of shared co-authors 7

Mario Albrecht

Institute for Knowledge Discovery, Graz University of Technology

Career Start Year 2002

Number of shared co-authors 0

Osvaldo Gra??a

Spanish National Cancer Research Centre-CNIO

Career Start Year 2002

Number of shared co-authors 2

Haiyuan Yu

Weill Institute for Cell and Molecular Biology, Cornell University

Career Start Year 2001

Number of shared co-authors 4

Parag Mallick

Stanford University

Career Start Year 2000

Number of shared co-authors 1

Gary D Bader

University of Toronto

Career Start Year 2000

Number of shared co-authors 13

Maricel G Kann

University of Maryland

Career Start Year 2000

Number of shared co-authors 1

Oliver Kohlbacher

Max Planck Institute for Developmental Biology

Career Start Year 2000

Number of shared co-authors 9

Luana Licata

University of Tor Vergata

Career Start Year 1999

Number of shared co-authors 2

Juri Rappsilber

Institute for Biotechnology, Technical University Berlin

Career Start Year 1998

Number of shared co-authors 6

Igor Jurisica

Schroeder Arthritis Institute

Career Start Year 1998

Number of shared co-authors 0

Alex Kentsis

Memorial Sloan-Kettering Cancer Center

Career Start Year 1998

Number of shared co-authors 1

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 1

Melissa S Cline

Genomics Institute, University of California Santa Cruz

Career Start Year 1997

Number of shared co-authors 6

Erik Verschueren

University of California San Francisco

Career Start Year 1997

Number of shared co-authors 2

J Lynn Fink

The University of Queensland Diamantina Institute, The University of Queensland

Career Start Year 1997

Number of shared co-authors 8

Patrick Aloy

Institucio Catalana de Recerca i Estudis Avancats (ICREA)

Career Start Year 1997

Number of shared co-authors 1

Ioannis Xenarios

University of Lausanne

Career Start Year 1994

Number of shared co-authors 6

David Feny??

Institute for Systems Genetics, NYU Grossman School of Medicine

Career Start Year 1989

Number of shared co-authors 2

Javier De Las Rivas

Cancer Research Centre (IBMCC/CSIC/USAL/IBSAL)

Career Start Year 1989

Number of shared co-authors 1

S??ren Brunak

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1988

Number of shared co-authors 5

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 19

row(s) 1 - 30 of 30

Holger Moch

University Hospital Zurich

Co-authored papers 10

Ruedi Aebersold

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 5

Christian von Mering

Co-authored papers 5

Alexander Leitner

ETH Zurich

Co-authored papers 4

Paola Picotti

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 4

Chantal Pauli

University Hospital Zurich

Co-authored papers 3

Mark A Rubin

University of Bern

Co-authored papers 2

Thomas Walzthoeni

Institute for Computational Biology

Co-authored papers 2

Martin Beck

Max Planck Institute of Biophysics

Co-authored papers 2

Mark Gerstein

Yale University

Co-authored papers 1

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 1

Lukas M Weber

Johns Hopkins Bloomberg School of Public Health

Co-authored papers 1

Lars Feuerbach

German Cancer Research Center (DKFZ)

Co-authored papers 1

Kristoffer Vitting-Seerup

Technical University of Denmark

Co-authored papers 1

Markus G Manz

Co-authored papers 1

James L Engel

David Geffen School of Medicine, University of California los angeles

Co-authored papers 1

Abel Gonzalez-Perez

Universitat Pompeu Fabra

Co-authored papers 1

Xiaorong Wang

University of California Irvine

Co-authored papers 1

Shimin Shuai

Southeast University

Co-authored papers 1

Chris Sander

Broad Institute of MIT and Harvard

Co-authored papers 1

Nikos Sidiropoulos

Rigshospitalet, University of Copenhagen

Co-authored papers 1

Rory Johnson

Co-authored papers 1

Manolis Kellis

Massachusetts Institute of Technology

Co-authored papers 1

Joachim Weischenfeldt

University of Copenhagen

Co-authored papers 1

Jaegil Kim

Co-authored papers 1

Lorna J Smith

University of Oxford

Co-authored papers 1

Nenad Ban

Institute of Molecular Biology and Biophysics, ETH Zurich

Co-authored papers 1

Jeremiah Wala

The Broad Institute of MIT and Harvard

Co-authored papers 1

James E Haber

Brandeis University

Co-authored papers 1

Gad Getz

Broad Institute of the Massachusetts Institute of Technology and Harvard

Co-authored papers 1

1 - 30

Author Details

Column Actions

Recommended Authors

Collaborators