Author details

Full Name

Rama Balakrishnan

Affiliation

Genentech Inc.

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
31158512	Ontology mapping for semantically enabled applications.	Drug Discov Today	2019
28132844	Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.	Mol Cell	2017
26917558	Guidelines for the functional annotation of microRNAs using the Gene Ontology.	RNA	2016
26578556	The Saccharomyces Genome Database Variant Viewer.	Nucleic Acids Res	2016
27252399	Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.	Database (Oxford)	2016
26097192	Cross-organism analysis using InterMine.	Genesis	2015
24374639	The reference genome sequence of Saccharomyces cerevisiae: then and now.	G3 (Bethesda)	2014
25052702	Standardized description of scientific evidence using the Evidence Ontology (ECO).	Database (Oxford)	2014
23242164	A gene ontology inferred from molecular networks.	Nat Biotechnol	2013
23842463	A guide to best practices for Gene Ontology (GO) manual annotation.	Database (Oxford)	2013
23981286	Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.	Database (Oxford)	2013
23652793	InterMOD: integrated data and tools for the unification of model organism research.	Sci Rep	2013
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
22110037	Saccharomyces Genome Database: the genomics resource of budding yeast.	Nucleic Acids Res	2012
22434836	CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.	Database (Oxford)	2012
22434830	YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.	Database (Oxford)	2012
21411447	Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.	Database (Oxford)	2011
19906697	Saccharomyces Genome Database provides mutant phenotype data.	Nucleic Acids Res	2010
17982175	Gene Ontology annotations at SGD: new data sources and annotation methods.	Nucleic Acids Res	2008
17142221	Expanded protein information at SGD: new pages and proteome browser.	Nucleic Acids Res	2007
16381907	Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.	Nucleic Acids Res	2006
15608219	Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).	Nucleic Acids Res	2005
14681407	The Gene Ontology (GO) database and informatics resource.	Nucleic Acids Res	2004
15153302	Saccharomyces genome database: underlying principles and organisation.	Brief Bioinform	2004
14681421	Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.	Nucleic Acids Res	2004
12519985	Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins.	Nucleic Acids Res	2003
12073322	Saccharomyces Genome Database.	Methods Enzymol	2002
11414224	LabVelocity: online tools for life science products, protocols, technical information, MEDLINE searches, and laboratory calculations.	Biotechniques	2001
11248037	Reverse engineering the (beta/alpha )8 barrel fold.	Proc Natl Acad Sci U S A	2001

1 - 29 of 29

John Harry Caufield

American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University

Career Start Year 2012

Number of shared co-authors 3

Gergely Csaba

Ludwig-Maximilians-Universitat Munchen

Career Start Year 2007

Number of shared co-authors 0

Toshiaki Katayama

Database Center for Life Science

Career Start Year 2004

Number of shared co-authors 5

Chad L Myers

University of Minnesota - Twin Cities

Career Start Year 2004

Number of shared co-authors 9

Michael Riffle

University of Washington

Career Start Year 2003

Number of shared co-authors 0

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 1

Chris Stark

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 2002

Number of shared co-authors 9

Patrick Kemmeren

Princess Maxima Center for Pediatric Oncology

Career Start Year 2002

Number of shared co-authors 1

Lorrie Boucher

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 2001

Number of shared co-authors 11

Bobby-Joe Breitkreutz

The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital

Career Start Year 2001

Number of shared co-authors 9

Shuichi Kawashima

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1999

Number of shared co-authors 2

Matthew Pocock

Newcastle University

Career Start Year 1998

Number of shared co-authors 4

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 13

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 9

Iddo Friedberg

Iowa State University

Career Start Year 1997

Number of shared co-authors 25

Marcin P Joachimiak

E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago

Career Start Year 1997

Number of shared co-authors 3

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 6

David B Emmert

Harvard University

Career Start Year 1994

Number of shared co-authors 2

Patricia L Whetzel

University of Colorado Anschutz Medical Campus

Career Start Year 1993

Number of shared co-authors 19

Cathy H Wu

Georgetown University Medical Center

Career Start Year 1992

Number of shared co-authors 39

Marc R Wilkins

University of New South Wales

Career Start Year 1992

Number of shared co-authors 2

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 24

Marc Vidal

Blavatnik Institute, Harvard Medical School

Career Start Year 1989

Number of shared co-authors 11

Alfonso Valencia

Josep Carreras Leukaemia Research Institute (IJC)

Career Start Year 1986

Number of shared co-authors 26

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 5

Mark Johnston

University of Colorado School of Medicine

Career Start Year 1984

Number of shared co-authors 4

Darren A Natale

Georgetown University Medical Center

Career Start Year 1982

Number of shared co-authors 37

Amos Bairoch

University of Geneva

Career Start Year 1982

Number of shared co-authors 46

Peter D Karp

Pangea Systems Inc., USA and Marine Biological Laboratory

Career Start Year 1981

Number of shared co-authors 16

Charles Boone

University of Toronto

Career Start Year 1979

Number of shared co-authors 8

row(s) 1 - 30 of 30

J Michael Cherry

Stanford University

Co-authored papers 21

Gail Binkley

Stanford University

Co-authored papers 17

Maria C Costanzo

The Broad Institute of Harvard and MIT

Co-authored papers 16

Shuai Weng

Stanford University

Co-authored papers 14

Stacia R Engel

Stanford University

Co-authored papers 14

Eurie L Hong

Stanford University School of Medicine

Co-authored papers 14

Dianna G Fisk

Stanford Medicine Clinical Genomics Program

Co-authored papers 13

Robert S Nash

Stanford University

Co-authored papers 13

Karen R Christie

Stanford University Medical School

Co-authored papers 13

Selina S Dwight

Stanford University School of Medicine

Co-authored papers 13

David Botstein

Calico Life Sciences LLC

Co-authored papers 10

Kara Dolinski

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 10

Marek S Skrzypek

Stanford University

Co-authored papers 10

Benjamin C Hitz

Stanford University School of Medicine

Co-authored papers 10

Jodi E Hirschman

Broad Institute of MIT and Harvard

Co-authored papers 9

Julie Park

Stanford University

Co-authored papers 9

Anand Sethuraman

Stanford University School of Medicine

Co-authored papers 8

Kalpana Karra

Stanford University

Co-authored papers 8

Chandra L Theesfeld

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 7

Stuart R Miyasato

Stanford University

Co-authored papers 7

Edith D Wong

Stanford University

Co-authored papers 7

Mark Schroeder

Co-authored papers 6

Rose Oughtred

Lewis-Sigler Institute for Integrative Genomics, Princeton University

Co-authored papers 5

Rachael P Huntley

Institute of Cardiovascular Science, University College London

Co-authored papers 5

Judith A Blake

Co-authored papers 4

Midori A Harris

University of Cambridge

Co-authored papers 4

Becket Feierbach

Gilead Sciences Inc.

Co-authored papers 3

Suzanna E Lewis

Lawrence Berkeley National Laboratory

Co-authored papers 3

Valerie Wood

University of Cambridge

Co-authored papers 3

Jane Lomax

Wellcome Sanger Institute

Co-authored papers 3

1 - 30

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