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Author Details

Subbiah Parthasarathy
New York University Grossman School of Medicine
1990
56
17
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36678572Identification of Novel Small Molecule Ligands for JAK2 Pseudokinase Domain.Pharmaceuticals (Basel)2023
36014428<i>In Silico</i> Evaluation of Bioactive Compounds of <i>Artemisia pallens</i> Targeting the Efflux Protein of Multidrug-Resistant <i>Acinetobacter baumannii</i> (LAC-4 Strain).Molecules2022
36149648SZN-413, a FZD4 Agonist, as a Potential Novel Therapeutic for the Treatment of Diabetic Retinopathy.Transl Vis Sci Technol2022
31483234Combined QSAR Model and Chemical Similarity Search for Novel HMGCoA Reductase Inhibitors for Coronary Heart Disease.Curr Comput Aided Drug Des2020
32081792PredictSuperFam-PSS-3D1D: A server for predicting superfamily for the annotation of twilight zone protein sequences.J Struct Biol2020
31806549Ultrasonically assisted synthesis of barium stannate incorporated graphitic carbon nitride nanocomposite and its analytical performance in electrochemical sensing of 4-nitrophenol.Ultrason Sonochem2020
33161051Gray code representation of the universal genetic code: Generation of never born protein sequences using Toeplitz matrix approach.Biosystems2020
33136065HPREP: a comprehensive database for human proteome repeats.J Integr Bioinform2020
32404014PDB-2-PBv3.0: An updated protein block database.J Bioinform Comput Biol2020
30317998QSAR Analysis of Multimodal Antidepressants Vortioxetine Analogs Using Physicochemical Descriptors and MLR Modeling.Curr Comput Aided Drug Des2019
31649924Identification and Analysis of Long Repeats of Proteins at the Domain Level.Front Bioeng Biotechnol2019
28353142Analysis of Species-Selectivity of Human, Mouse and Rat Cytochrome P450 1A and 2B Subfamily Enzymes using Molecular Modeling, Docking and Dynamics Simulations.Cell Biochem Biophys2018
27761949Pairwise contact energy statistical potentials can help to find probability of point mutations.Proteins2017
28162953Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex.Structure2017
28246174Stilbene epoxidation and detoxification in a <i>Photorhabdus luminescens</i>-nematode symbiosis.J Biol Chem2017
28260518Molecular Dynamics Simulations of Novel Potential Inhibitors for Penicillin Binding Protein 2B of the Resistant 5204 Strain of Streptococcus Pneumoniae.Curr Comput Aided Drug Des2017
27194593Network analysis and cross species comparison of protein-protein interaction networks of human, mouse and rat cytochrome P450 proteins that degrade xenobiotics.Mol Biosyst2016
25801257An investigation on the diversity of mosquitocidal bacteria and its relationship with incidence of vector borne diseases.Trop Biomed2015
26667936A Strategy to Employ Clitoria ternatea as a Prospective Brain Drug Confronting Monoamine Oxidase (MAO) Against Neurodegenerative Diseases and Depression.Nat Prod Bioprospect2015
25709647Fertilizers and Mixed Crop Cultivation of Chromium Tolerant and Sensitive Plants under Chromium Toxicity.J Toxicol2015
23855661SVM-PB-Pred: SVM based protein block prediction method using sequence profiles and secondary structures.Protein Pept Lett2014
25651615Chromium accumulation potential of Zea mays grown under four different fertilizers.Indian J Exp Biol2014
25139911Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex.Mol Cell Proteomics2014
22591480A protein block based fold recognition method for the annotation of twilight zone sequences.Protein Pept Lett2013
23535894Crystal structure of human Karyopherin β2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2.J Struct Funct Genomics2013
23499021Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex.Structure2013
22448818Computational studies on the resistance of penicillin-binding protein 2B (PBP2B) of wild-type and mutant strains of Streptococcus pneumoniae against β-lactam antibiotics.Chem Biol Drug Des2013
22544723Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.Proteins2012
21097780ModBase, a database of annotated comparative protein structure models, and associated resources.Nucleic Acids Res2011
22160493PSS-3D1D: an improved 3D1D profile method of protein fold recognition for the annotation of twilight zone sequences.J Struct Funct Genomics2011
21365675Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.Proteins2011
20310066Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.Proteins2010
20737437Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.Proteins2010
20156452Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092--&gt;Glu) of the C. elegans ortholog RPM-1.J Mol Biol2010
19696724Larvicidal efficacy of various formulations of Bacillus sphaericus against the resistant strain of Culex quinquefasciatus (Diptera: Culicidae) from southern India.Trop Biomed2009
18598704Structural insights into the recognition of peroxisomal targeting signal 1 by Trypanosoma brucei peroxin 5.J Mol Biol2008
18163784Multiple period-doubling bifurcation route to chaos in periodically pulsed Murali-Lakshmanan-Chua circuit-controlling and synchronization of chaos.Chaos2007
16730023NADP+ expels both the co-factor and a substrate analog from the Mycobacterium tuberculosis ThyX active site: opportunities for anti-bacterial drug design.J Mol Biol2006
16139296Structure of the Mycobacterium tuberculosis flavin dependent thymidylate synthase (MtbThyX) at 2.0A resolution.J Mol Biol2005
15264854Synthesis and characterization of bioconjugates of S-layer proteins.Bioconjug Chem2004
14563846Structure of Plasmodium falciparum triose-phosphate isomerase-2-phosphoglycerate complex at 1.1-A resolution.J Biol Chem2003
12403619Structure of the Plasmodium falciparum triosephosphate isomerase-phosphoglycolate complex in two crystal forms: characterization of catalytic loop open and closed conformations in the ligand-bound state.Biochemistry2002
12454486Cloning, expression, purification and preliminary X-ray crystallographic studies of 2-methylisocitrate lyase from Salmonella typhimurium.Acta Crystallogr D Biol Crystallogr2002
12454456Structures of Plasmodium falciparum triosephosphate isomerase complexed to substrate analogues: observation of the catalytic loop in the open conformation in the ligand-bound state.Acta Crystallogr D Biol Crystallogr2002
113135983',4'-Bis(4-chlorophenyl)spiro[chroman-3,5'(4'H)-isoxazol]-4-one.Acta Crystallogr C2001
10679524Protein thermal stability: insights from atomic displacement parameters (B values).Protein Eng2000
109350946,7-Dihydrodibenzo[e,g]azulen-8(5H)-one and 12,13-dihydrobenzo[e]napth[2,1-g]azulen-14(11H)-one.Acta Crystallogr C2000
10089408On the correlation between the main-chain and side-chain atomic displacement parameters (B values) in high-resolution protein structures.Acta Crystallogr D Biol Crystallogr1999
10320404The domain-server: direct prediction of protein domain-homologies from BLAST search.Bioinformatics1999
10211840Disulfide engineering at the dimer interface of Lactobacillus casei thymidylate synthase: crystal structure of the T155C/E188C/C244T mutant.Protein Sci1999
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Collaborators

The State University of New Jersey
Co-authored papers 8
University of California San Francisco
Co-authored papers 8
Eli Lilly and Co.
Co-authored papers 7
Albert Einstein College of Medicine
Co-authored papers 7
Albert Einstein College of Medicine
Co-authored papers 7
The Rockefeller University
Co-authored papers 6
University of California san francisco
Co-authored papers 6
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 6
The Rockefeller University
Co-authored papers 6
Co-authored papers 5
Argonne National Laboratory
Co-authored papers 5
NYU Langone Hospital - Brooklyn Brooklyn
Co-authored papers 5
New York SGX Research Center for Structural Genomics
Co-authored papers 5
Lilly Research Laboratories
Co-authored papers 5
Stanford University
Co-authored papers 5
Stanford University
Co-authored papers 4
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
Stanford University
Co-authored papers 3
Institut Laue-Langevin (ILL)
Co-authored papers 3
Creighton University
Co-authored papers 3
Co-authored papers 2
Co-authored papers 2
New York University Grossman School of Medicine
Co-authored papers 2
NYU School of Medicine
Co-authored papers 2
Skirball Institute of Biomolecular Medicine, New York University School of Medicine
Co-authored papers 2
Stanford University
Co-authored papers 2
Co-authored papers 2
University of Central Florida
Co-authored papers 2
Co-authored papers 2
Albert Einstein College of Medicine
Co-authored papers 2