Author details

Full Name

Ronak Y Patel

Affiliation

Baylor College of Medicine

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36373660	CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.	Nucleic Acids Res	2023
35624339	A community approach to the cancer-variant-interpretation bottleneck.	Nat Cancer	2022
35311178	The GA4GH Variation Representation Specification: A computational framework for variation representation and federated identification.	Cell Genom	2021
30311374	ClinGen Allele Registry links information about genetic variants.	Hum Mutat	2018
30139913	Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci.	Science	2018
30311382	Evidence-based assessments of clinical actionability in the context of secondary findings: Updates from ClinGen's Actionability Working Group.	Hum Mutat	2018
30311379	ClinGen advancing genomic data-sharing standards as a GA4GH driver project.	Hum Mutat	2018
28081714	ClinGen Pathogenicity Calculator: a configurable system for assessing pathogenicity of genetic variants.	Genome Med	2017
27181684	Performance of ACMG-AMP Variant-Interpretation Guidelines among Nine Laboratories in the Clinical Sequencing Exploratory Research Consortium.	Am J Hum Genet	2016
27851969	Epigenomic Deconvolution of Breast Tumors Reveals Metabolic Coupling between Constituent Cell Types.	Cell Rep	2016
27392081	Performance of ACMG-AMP Variant-Interpretation Guidelines among Nine Laboratories in the Clinical Sequencing Exploratory Research Consortium.	Am J Hum Genet	2016
26753103	Determination of specificity influencing residues for key transcription factor families.	Quant Biol	2015
24369152	Discriminative motif optimization based on perceptron training.	Bioinformatics	2014
24523353	An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins.	Nucleic Acids Res	2014
21970716	Natural prenylated resveratrol analogs arachidin-1 and -3 demonstrate improved glucuronidation profiles and have affinity for cannabinoid receptors.	Xenobiotica	2012
22987128	Combined rule extraction and feature elimination in supervised classification.	IEEE Trans Nanobioscience	2012
23046442	Implementation of multiple-instance learning in drug activity prediction.	BMC Bioinformatics	2012
21964243	Epigallocatechin gallate (EGCG) inhibits type II phosphatidylinositol 4-kinases: a key component in pathways of phosphoinositide turnover.	Arch Biochem Biophys	2011
22166097	Leveraging domain information to restructure biological prediction.	BMC Bioinformatics	2011
19929829	Template-based protein modeling: recent methodological advances.	Curr Top Med Chem	2010
20681595	Protein kinase-inhibitor database: structural variability of and inhibitor interactions with the protein kinase P-loop.	J Proteome Res	2010
20667825	E93R substitution of Escherichia coli FtsZ induces bundling of protofilaments, reduces GTPase activity, and impairs bacterial cytokinesis.	J Biol Chem	2010
18298108	Characterization of symmetric and asymmetric lipid bilayers composed of varying concentrations of ganglioside GM1 and DPPC.	J Phys Chem B	2008
17212986	Fold-recognition and comparative modeling of human beta3GalT I, II, IV, V and VI and beta3GalNAcT I: prediction of residues conferring acceptor substrate specificity.	J Mol Graph Model	2007
17627603	Length and composition analysis of the cytoplasmic, transmembrane and stem regions of human Golgi glycosyltransferases.	Protein Pept Lett	2007
17408589	Characterization of the conformational and orientational dynamics of ganglioside GM1 in a dipalmitoylphosphatidylcholine bilayer by molecular dynamics simulations.	Biochim Biophys Acta	2007
16207893	Identification of linkage-specific sequence motifs in sialyltransferases.	Glycobiology	2006
16852851	Effect of the choice of the pressure coupling method on the spontaneous aggregation of DPPC molecules.	J Phys Chem B	2005

1 - 28 of 28

Younes Mokrab

Qatar University

Career Start Year 2004

Number of shared co-authors 0

Jun-Tao Guo

University of North Carolina at Charlotte

Career Start Year 1999

Number of shared co-authors 0

Daron M Standley

Osaka university

Career Start Year 1998

Number of shared co-authors 0

Dong Xu

University of Missouri

Career Start Year 1998

Number of shared co-authors 0

Mallur S Madhusudhan

Indian Institute of Science Education and Research Pune

Career Start Year 1996

Number of shared co-authors 0

Dietlind L Gerloff

Foundation for Applied Molecular Evolution (FfAME)

Career Start Year 1991

Number of shared co-authors 0

Baldo Oliva

Universitat Pompeu Fabra

Career Start Year 1991

Number of shared co-authors 0

Natarajan Kannan

University of Georgia

Career Start Year 1990

Number of shared co-authors 0

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 0

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 0

Ramanathan Sowdhamini

Indian Institute of Science

Career Start Year 1989

Number of shared co-authors 0

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 0

Shankar Subramaniam

University of California

Career Start Year 1989

Number of shared co-authors 0

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 0

Steven C Almo

Albert Einstein College of Medicine

Career Start Year 1988

Number of shared co-authors 0

Mauno Vihinen

Lund University

Career Start Year 1987

Number of shared co-authors 4

Denis C Shields

Conway Institute of Biomolecular and Biomedical Research, University College Dublin

Career Start Year 1987

Number of shared co-authors 1

Jadwiga Bienkowska

Pfizer Global Research and Development La Jolla

Career Start Year 1987

Number of shared co-authors 0

Adam Godzik

University of California Riverside

Career Start Year 1987

Number of shared co-authors 2

Andrej Sali (CM4AI)

University of California San Francisco

Career Start Year 1985

Number of shared co-authors 0

Mark S Johnson

Abo Akademi University

Career Start Year 1985

Number of shared co-authors 0

Carlo Ferrari

University of Padua

Career Start Year 1983

Number of shared co-authors 1

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 0

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 0

Chris Sander

Broad Institute of MIT and Harvard

Career Start Year 1979

Number of shared co-authors 4

Michael J E Sternberg

Imperial College London

Career Start Year 1976

Number of shared co-authors 1

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 2

Shoba Ranganathan

Macquarie University

Career Start Year 1972

Number of shared co-authors 2

Tom L Blundell

Heartand Lung Research Institute, University of Cambridge

Career Start Year 1971

Number of shared co-authors 0

Andras Fiser

Albert Einstein College of Medicine

Career Start Year 1968

Number of shared co-authors 0

row(s) 1 - 30 of 30

Aleksandar Milosavljevic

Baylor College of Medicine

Co-authored papers 10

Heidi L Rehm

The Broad Institute of MIT and Harvard

Co-authored papers 5

Piotr Pawliczek

Baylor College of Medicine

Co-authored papers 4

Sharon E Plon

Baylor College of Medicine

Co-authored papers 4

Lawrence Babb

Broad Institute of MIT and Harvard

Co-authored papers 4

Tristan Nelson

Genomic Medicine Institute

Co-authored papers 3

Alex H Wagner

Iowa State University, Mayo Clinic, Nationwide Children's Hospital, The Ohio State University College of Medicine, University of Iowa, Washington University in Saint Louis

Co-authored papers 3

Gary D Stormo

Washington University in St. Louis

Co-authored papers 3

Robert R Freimuth

Center for Individualized Medicine, Mayo Clinic

Co-authored papers 3

Gang Fu

Peking Haidian Hospital Beijing

Co-authored papers 3

Chris Bizon

Renaissance Computing Institute (RENCI), University of North Carolina at Chapel Hill