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Author Details

Robert J Millikin
Morgridge Institute for Research
2018
18
9
Gloria M Sheynkman (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36308684Enhanced Proteomic Data Analysis with MetaMorpheus.Methods Mol Biol2023
37915001Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models.BMC Bioinformatics2023
36308694Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ.Methods Mol Biol2023
35241129Enhanced protein isoform characterization through long-read proteogenomics.Genome Biol2022
36206157A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis.J Proteome Res2022
32967423Spritz: A Proteogenomic Database Engine.J Proteome Res2021
33683901Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.J Proteome Res2021
34375640Fused in sarcoma regulates DNA replication timing and kinetics.J Biol Chem2021
32243168A Bayesian Null Interval Hypothesis Test Controls False Discovery Rates and Improves Sensitivity in Label-Free Quantitative Proteomics.J Proteome Res2020
33692656An Algorithm to Improve the Speed of Semi and Non-Specific Enzyme Searches in Proteomics.Curr Bioinform2020
32650610Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform.Proteomes2020
32812765Interlaboratory Study for Characterizing Monoclonal Antibodies by Top-Down and Middle-Down Mass Spectrometry.J Am Soc Mass Spectrom2020
32584579Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.J Proteome Res2020
31050378Identification and Quantification of Proteoforms by Mass Spectrometry.Proteomics2019
31378069Improved Protein Inference from Multiple Protease Bottom-Up Mass Spectrometry Data.J Proteome Res2019
31479276Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.J Proteome Res2019
29083185Ultrafast Peptide Label-Free Quantification with FlashLFQ.J Proteome Res2018
29793340Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.J Proteome Res2018
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Collaborators

Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 17
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 15
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 6
Zach Rolfs
University of Wisconsin-Madison
Co-authored papers 5
Leah V Schaffer (CM4AI)
University of California San Diego
Co-authored papers 4
Stefan K Solntsev
University of Wisconsin-Madison
Co-authored papers 3
Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
Co-authored papers 3
Yunxiang Dai
University of Wisconsin-Madison
Co-authored papers 2
Ying Ge
University of Wisconsin-Madison
Co-authored papers 2
Lissa C Anderson
Florida State University
Co-authored papers 2
Gloria M Sheynkman (CM4AI)
University of Virginia
Co-authored papers 2
Neil L Kelleher
Northwestern University
Co-authored papers 2
Simi Kaur
University of Wisconsin-Madison
Co-authored papers 1
Erin D Jeffery
Agenus Inc, American Society for Mass Spectrometry, Hartwick College, Human Proteome Organisation, Large Scale Biology Corp, University of Virginia
Co-authored papers 1
Madison M Mehlferber
University of Virginia
Co-authored papers 1
Kristina Srzenti??
and the Feinberg School of Medicine, Northwestern University
Co-authored papers 1
Timothy J Griffin
University of Minnesota
Co-authored papers 1
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 1
Zhe Wang
University of Oklahoma
Co-authored papers 1
Lennart Martens
Co-authored papers 1
Rachel M Miller
University of Wisconsin-Madison
Co-authored papers 1
Jeffrey Shabanowitz
University of Virginia
Co-authored papers 1
Kalpana Raja
Morgridge Institute for Research
Co-authored papers 1
Mowei Zhou
Co-authored papers 1
Katherine E Buxton
University of Wisconsin , 1101 University Avenue
Co-authored papers 1
Chad R Weisbrod
Florida State University
Co-authored papers 1
Liangliang Sun
Michigan State University
Co-authored papers 1
Henrique S Seckler
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Co-authored papers 1
Chance John Luckey
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Release 1.2