Author details

Full Name

Matthew A Hibbs

Affiliation

ORCID

Career Start Year

2005

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
27519264	Regulatory complexity revealed by integrated cytological and RNA-seq analyses of meiotic substages in mouse spermatocytes.	BMC Genomics	2016
27364349	Unraveling the message: insights into comparative genomics of the naked mole-rat.	Mammalian Genome	2016
26367794	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.	Nature	2015
26351520	Affinity-seq detects genome-wide PRDM9 binding sites and reveals the impact of prior chromatin modifications on mammalian recombination hotspot usage.	Epigenetics Chromatin	2015
26595407	Homology cluster differential expression analysis for interspecies mRNA-Seq experiments.	Stat Appl Genet Mol Biol	2015
24945404	Phenotypic dissection of bone mineral density reveals skeletal site specificity and facilitates the identification of novel loci in the genetic regulation of bone mass attainment.	PLoS Genet	2014
24307629	Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks.	Stem Cells	2014
25236449	RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.	Genetics	2014
23468881	Cell-type-specific predictive network yields novel insights into mouse embryonic stem cell self-renewal and cell fate.	PLoS One	2013
22232070	Genome-wide analysis of N1ICD/RBPJ targets in vivo reveals direct transcriptional regulation of Wnt, SHH, and hippo pathway effectors by Notch1.	Stem Cells	2012
22912808	Pla2g12b and Hpn are genes identified by mouse ENU mutagenesis that affect HDL cholesterol.	PLoS One	2012
22448268	Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues.	PLoS One	2012
23951485	The need for mouse models in osteoporosis genetics research.		2012
23028291	Tissue-specific functional networks for prioritizing phenotype and disease genes.	PLoS Comput Biol	2012
21383504	Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma.	J Clin Invest	2011
20195258	Visualization of omics data for systems biology.	Nat Methods	2010
21085640	Functional genomics complements quantitative genetics in identifying disease-gene associations.	PLoS Comput Biol	2010
21076421	Quantitative analysis of fitness and genetic interactions in yeast on a genome scale.	Nat Methods	2010
19561015	The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.	Bioinformatics	2009
19300515	Directing experimental biology: a case study in mitochondrial biogenesis.	PLoS Comput Biol	2009
19300474	Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.	PLoS Genet	2009
19246570	Exploring the human genome with functional maps.	Genome Res	2009
19521830	Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data.	Methods Mol Biol	2009
17724061	Exploring the functional landscape of gene expression: directed search of large microarray compendia.	Bioinformatics	2007
17167106	Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies.	Genes Dev	2007
17626636	Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.	BMC Bioinformatics	2007
17032457	GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.	BMC Bioinformatics	2006
17005538	A scalable method for integration and functional analysis of multiple microarray datasets.	Bioinformatics	2006
16869964	Finding function: evaluation methods for functional genomic data.	BMC Genomics	2006
16420673	Discovery of biological networks from diverse functional genomic data.	Genome Biol	2005
15890080	Visualization methods for statistical analysis of microarray clusters.	BMC Bioinformatics	2005
16060571	Tools and applications for large-scale display walls.	IEEE Comput Graph Appl	2005