Author details

Full Name

Socorro Gama-Castro

Affiliation

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37971353	RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12.	Nucleic Acids Res	2024
37163020	A Gold Standard for Transcription Factor-Gene Regulatory Interactions in Escherichia coli K-12: Architecture of the Evidence Types.		2023
37220074	The EcoCyc Database (2023).	EcoSal Plus	2023
35237580	Sensory Systems and Transcriptional Regulation in .	Frontiers in Bioengineering and Biotechnology	2022
35584008	RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in K-12.	Microbial genomics	2022
34394059	The EcoCyc Database in 2021.	Front Microbiol	2021
33306798	Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties.	Database : the journal of biological databases and curation	2020
31118102	Similarity corpus on microbial transcriptional regulation.	Journal of Biomedical Semantics	2019
30395280	RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.	Nucleic Acids Research	2019
30137210	MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.		2019
30115066	A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.	BMC Biol	2018
30406744	The EcoCyc Database.	EcoSal Plus	2018
27899573	The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.	Nucleic Acids Res	2017
28605767	Strategies towards digital and semi-automated curation in RegulonDB.	Database : the journal of biological databases and curation	2017
28365731	Strategies towards digital and semi-automated curation in RegulonDB.	Database : the journal of biological databases and curation	2017
29220462	First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes.	Database : the journal of biological databases and curation	2017
27589961	Overview of the interactive task in BioCreative V.	Database (Oxford)	2016
26586805	COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.	Nucleic Acids Research	2016
26527724	RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.	Nucleic Acids Research	2016
24903516	Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.	Database : the journal of biological databases and curation	2014
26442933	The EcoCyc Database.	EcoSal Plus	2014
24214998	COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.	Nucleic Acids Research	2014
23203884	RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.	Nucleic Acids Research	2013
23143106	EcoCyc: fusing model organism databases with systems biology.	Nucleic Acids Res	2013
21051347	RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).	Nucleic Acids Research	2011
21097882	EcoCyc: a comprehensive database of Escherichia coli biology.	Nucleic Acids Res	2011
21310789	A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins.	Microbiology (United Kingdom)	2011
18978060	Bioinformatics resources for the study of gene regulation in bacteria.	Journal of Bacteriology	2009
18974181	EcoCyc: a comprehensive view of Escherichia coli biology.	Nucleic Acids Res	2009
18158297	RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.	Nucleic Acids Research	2008
17940092	Multidimensional annotation of the Escherichia coli K-12 genome.	Nucleic Acids Res	2007
16381895	RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.	Nucleic Acids Research	2006
16398937	The comprehensive updated regulatory network of Escherichia coli K-12.	BMC Bioinformatics	2006
15608210	EcoCyc: a comprehensive database resource for Escherichia coli.	Nucleic Acids Res	2005
14681419	RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.	Nucleic Acids Research	2004
14708114	Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach.	Biotechnology and Bioengineering	2003
11752253	The EcoCyc Database.	Nucleic Acids Res	2002
11125053	RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.	Nucleic Acids Research	2001
11591659	Azotobacter vinelandii aldehyde dehydrogenase regulated by sigma(54): role in alcohol catabolism and encystment.	Journal of Bacteriology	2001
10592182	RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.	Nucleic Acids Res	2000
9657339	Cloning and expression of the Entamoeba histolytica ERD2 gene.	Molecular and Biochemical Parasitology	1998