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Author Details

Nuria Lopez-Bigas
Universitat Pompeu Fabra
1999
149
63
Timothy Clark (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36325893Genomics improves risk stratification of adults with T-cell acute lymphoblastic leukemia enrolled in measurable residual disease-oriented trials.Haematologica2023
36325893Genomics improves risk stratification of adults with T-cell acute lymphoblastic leukemia enrolled in measurable residual disease-oriented trials.Haematologica2023
36780550Copy number footprints of platinum-based anticancer therapies.PLoS Genet2023
37454136Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma.Nat Commun2023
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
36697836Author Correction: The repertoire of mutational signatures in human cancer.Nature2023
36928603Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.Nat Genet2023
37454136Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma.Nat Commun2023
36697832Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.Nature2023
36697836Author Correction: The repertoire of mutational signatures in human cancer.Nature2023
36780550Copy number footprints of platinum-based anticancer therapies.PLoS Genet2023
36928603Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.Nat Genet2023
34718417DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.Bioinformatics2022
36376284Author Correction: High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER<sup>+</sup> breast cancer.Nat Commun2022
35460607Germline MBD4 deficiency causes a multi-tumor predisposition syndrome.Am J Hum Genet2022
35953718Detection of early seeding of Richter transformation in chronic lymphocytic leukemia.Nat Med2022
36071033High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER<sup>+</sup> breast cancer.Nat Commun2022
35871184Discovering the drivers of clonal hematopoiesis.Nat Commun2022
36264838Ten simple rules for a successful international consortium in big data omics.PLoS Comput Biol2022
34718417DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.Bioinformatics2022
34949779Predicting disease variants using biodiversity and machine learning.Nat Biotechnol2022
35460607Germline MBD4 deficiency causes a multi-tumor predisposition syndrome.Am J Hum Genet2022
35871184Discovering the drivers of clonal hematopoiesis.Nat Commun2022
36071033High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER<sup>+</sup> breast cancer.Nat Commun2022
36264838Ten simple rules for a successful international consortium in big data omics.PLoS Comput Biol2022
35953718Detection of early seeding of Richter transformation in chronic lymphocytic leukemia.Nat Med2022
36376284Author Correction: High p16 expression and heterozygous RB1 loss are biomarkers for CDK4/6 inhibitor resistance in ER<sup>+</sup> breast cancer.Nat Commun2022
34949779Predicting disease variants using biodiversity and machine learning.Nat Biotechnol2022
33347579Variable interplay of UV-induced DNA damage and repair at transcription factor binding sites.Nucleic Acids Res2021
34017094Mutational signatures impact the evolution of anti-EGFR antibody resistance in colorectal cancer.Nat Ecol Evol2021
33712615Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer.Nat Commun2021
34321661In silico saturation mutagenesis of cancer genes.Nature2021
33347579Variable interplay of UV-induced DNA damage and repair at transcription factor binding sites.Nucleic Acids Res2021
34493867Genomic and evolutionary classification of lung cancer in never smokers.Nat Genet2021
34376657The evolution of hematopoietic cells under cancer therapy.Nat Commun2021
34651586Combined presentation and immunogenicity analysis reveals a recurrent RAS.Q61K neoantigen in melanoma.J Clin Invest2021
33712615Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer.Nat Commun2021
34493867Genomic and evolutionary classification of lung cancer in never smokers.Nat Genet2021
34376657The evolution of hematopoietic cells under cancer therapy.Nat Commun2021
34651586Combined presentation and immunogenicity analysis reveals a recurrent RAS.Q61K neoantigen in melanoma.J Clin Invest2021
34017094Mutational signatures impact the evolution of anti-EGFR antibody resistance in colorectal cancer.Nat Ecol Evol2021
34321661In silico saturation mutagenesis of cancer genes.Nature2021
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
32025018The repertoire of mutational signatures in human cancer.Nature2020
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
32592465BnpC: Bayesian non-parametric clustering of single-cell mutation profiles.Bioinformatics2020
32751160The DYRK Family of Kinases in Cancer: Molecular Functions and Therapeutic Opportunities.Cancers (Basel)2020
33128047Are carcinogens direct mutagens?Nat Genet2020
33229462Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2.Sci Transl Med2020
33225950The evolution of relapse of adult T cell acute lymphoblastic leukemia.Genome Biol2020
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Collaborators

Abel Gonzalez-Perez
Universitat Pompeu Fabra
Co-authored papers 50
David Tamborero
Universitat Pompeu Fabra
Co-authored papers 23
Xavier Estivill
Sidra Medical Center
Co-authored papers 16
Jordi Deu-Pons
Institute for Research in Biomedicine
Co-authored papers 12
Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
Co-authored papers 7
Gunes Gundem
Memorial Sloan Kettering Cancer Center
Co-authored papers 7
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 7
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 7
Rodrigo Dienstmann
Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus
Co-authored papers 7
Ludmil B Alexandrov
Moores Cancer Center, university of california san diego
Co-authored papers 6
David A Wheeler
Baylor College of Medicine
Co-authored papers 6
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 6
Jaegil Kim
Co-authored papers 5
Francisco Mart??nez-Jim??nez
Center for Molecular Medicine and Oncode Institute, University Medical Center Utrecht
Co-authored papers 5
Michael S Lawrence
Co-authored papers 5
Ville Mustonen
University of Helsinki
Co-authored papers 4
Benjamin J Raphael
Princeton University
Co-authored papers 4
J??ri Reimand
Ontario Institute for Cancer Research
Co-authored papers 4
Roderic Guig??
Barcelona Institute of Science and Technology
Co-authored papers 4
Xose S Puente
University of Oviedo
Co-authored papers 4
Elias Campo
Institute for Biomedical Research August Pi I Sunyer
Co-authored papers 4
Julian M Hess
Broad Institute of MIT and Harvard
Co-authored papers 3
Marta Gut
Universitat de Barcelona (UB)
Co-authored papers 3
Santiago González-Moreno
Co-authored papers 3
Holger Heyn
Barcelona Institute of Science and Technology, Spain Universitat Pompeu Fabra
Co-authored papers 3
Jianjiong Gao
Memorial Sloan Kettering Cancer Center
Co-authored papers 3
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
Co-authored papers 3
Joan Albanell
Hospital del Mar Research Institute
Co-authored papers 3
Chris Sander
Broad Institute of MIT and Harvard
Co-authored papers 3
Adam A Margolin
Icahn School of Medicine
Co-authored papers 3
Release 1.2