Author details

Full Name

Valerie Wood

Affiliation

University of Cambridge

ORCID

Career Start Year

1999

Papers

H Index

Expertise

CM4AI Collaborator

Gloria M Sheynkman (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36866529	The Gene Ontology knowledgebase in 2023.	Genetics	2023
37401199	A framework for community curation of interspecies interactions literature.	Elife	2023
34788826	PHI-base in 2022: a multi-species phenotype database for Pathogen-Host Interactions.	Nucleic Acids Res	2022
35380656	JaponicusDB: rapid deployment of a model organism database for an emerging model species.	Genetics	2022
36408459	Reciprocal best structure hits: using AlphaFold models to discover distant homologues.	Bioinform Adv	2022
35961013	A roadmap for the functional annotation of protein families: a community perspective.	Database (Oxford)	2022
35100366	Fission stories: using PomBase to understand Schizosaccharomyces pombe biology.	Genetics	2022
32353878	Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.	Database (Oxford)	2020
31733065	PHI-base: the pathogen-host interactions database.	Nucleic Acids Res	2020
32875947	Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns.	Open Biol	2020
30321395	PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.	Nucleic Acids Res	2019
30938578	Hidden in plain sight: what remains to be discovered in the eukaryotic proteome?	Open Biol	2019
30753445	Transcriptional regulation of the genes involved in protein metabolism and processing in Saccharomyces cerevisiae.	FEMS Yeast Res	2019
29761456	PomBase: The Scientific Resource for Fission Yeast.	Methods Mol Biol	2018
27794554	RNAcentral: a comprehensive database of non-coding RNA sequences.	Nucleic Acids Res	2017
26953269	Corrigendum. An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System.	Genetics	2016
27334346	Model organism databases: essential resources that need the support of both funders and users.	BMC Biol	2016
26917558	Guidelines for the functional annotation of microRNAs using the Gene Ontology.	RNA	2016
25361970	PomBase 2015: updates to the fission yeast database.	Nucleic Acids Res	2015
26447128	An Ancient Yeast for Young Geneticists: A Primer on the Schizosaccharomyces pombe Model System.	Genetics	2015
26635866	AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast.	Front Genet	2015
24574118	Canto: an online tool for community literature curation.	Bioinformatics	2014
24929579	Improving functional annotation for industrial microbes: a case study with Pichia pastoris.	Trends Biotechnol	2014
24885854	A method for increasing expressivity of Gene Ontology annotations using a compositional approach.	BMC Bioinformatics	2014
23161678	Gene Ontology annotations and resources.	Nucleic Acids Res	2013
23658422	FYPO: the fission yeast phenotype ontology.	Bioinformatics	2013
23697806	A genome-wide resource of cell cycle and cell shape genes of fission yeast.	Open Biol	2013
22039153	PomBase: a comprehensive online resource for fission yeast.	Nucleic Acids Res	2012
22359495	On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report.	PLoS Comput Biol	2012
21270388	Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability.	Genetics	2011
20473289	Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.	Nat Biotechnol	2010
18000002	The BioGRID Interaction Database: 2008 update.	Nucleic Acids Res	2008
18475267	Use and misuse of the gene ontology annotations.	Nat Rev Genet	2008
18488015	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.	Nature	2008
16845020	YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms.	Nucleic Acids Res	2006
17072883	Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100%.	Yeast	2006
17072881	How to get the most from fission yeast genome data: a report from the 2006 European Fission Yeast Meeting computing workshop.	Yeast	2006
17072880	Tools and resources for Sz. pombe: a report from the 2006 European Fission Yeast Meeting.	Yeast	2006
15826641	Integration of tools and resources for display and analysis of genomic data for protozoan parasites.	Int J Parasitol	2005
14681407	The Gene Ontology (GO) database and informatics resource.	Nucleic Acids Res	2004
14681429	GeneDB: a resource for prokaryotic and eukaryotic organisms.	Nucleic Acids Res	2004
12952871	Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe.	Genome Res	2003
11921100	The mei3 region of the Schizosaccharomyces pombe genome.	Yeast	2002
18628858	Website review: how to get the best from fission yeast genome data.	Comp Funct Genomics	2002
11536333	Analysis of 41 kb of the DNA sequence from the right arm of chromosome II of Schizosaccharomyces pombe.	Yeast	2001
18628908	A re-annotation of the Saccharomyces cerevisiae genome.	Comp Funct Genomics	2001
11223945	Subtelomeric sequence from the right arm of Schizosaccharomyces pombe chromosome I contains seven permease genes.	Yeast	2001
10689325	Functional Websites for Parasite Genome Projects.	Parasitol Today	2000
10923029	Current awareness on yeast.	Yeast	2000
10923028	The mating-type region of Schizosaccharomyces pombe h(-S) 972: sequencing and analysis of 69 kb including the expressed mat1 locus.	Yeast	2000

1 - 50 of 54

John Harry Caufield

American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University

Career Start Year 2012

Number of shared co-authors 9

Jiewei Xu

Quantitative Biosciences Institute (QBI), University of California san francisco

Career Start Year 2012

Number of shared co-authors 1

Matthew Jessulat

University of Regina

Career Start Year 2006

Number of shared co-authors 0

Toshiaki Katayama

Database Center for Life Science

Career Start Year 2004

Number of shared co-authors 5

Chad L Myers

University of Minnesota - Twin Cities

Career Start Year 2004

Number of shared co-authors 19

Mohan Babu

University of Regina

Career Start Year 2004

Number of shared co-authors 3

Huiming Ding

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 0

Vera van Noort

Leiden University, Institute of Biology Leiden

Career Start Year 2003

Number of shared co-authors 0

Michael Riffle

University of Washington

Career Start Year 2003

Number of shared co-authors 0

Gordon Chua

University of Calgary

Career Start Year 2000

Number of shared co-authors 5

Assen Roguev

University of California, USA Quantitative Biosciences Institute (QBI) san francisco

Career Start Year 2000

Number of shared co-authors 6

Amy Hin Yan Tong

University of Toronto

Career Start Year 1999

Number of shared co-authors 10

Matthew Pocock

Newcastle University

Career Start Year 1998

Number of shared co-authors 3

Lars Juhl Jensen

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen

Career Start Year 1998

Number of shared co-authors 14

Berend Snel

Utrecht University

Career Start Year 1998

Number of shared co-authors 2

Ashkan Golshani

Ottawa Institute of Systems Biology, Carleton University

Career Start Year 1997

Number of shared co-authors 2

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 11

Aim??e M Dudley

Pacific Northwest Research Institute

Career Start Year 1994

Number of shared co-authors 0

Bianca Habermann

Aix Marseille University, CNRS, Turing Center for Living Systems

Career Start Year 1993

Number of shared co-authors 2

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 7

Marc R Wilkins

University of New South Wales

Career Start Year 1992

Number of shared co-authors 3

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 8

Peer Bork

University of Wurzburg

Career Start Year 1989

Number of shared co-authors 37

Marc Vidal

Blavatnik Institute, Harvard Medical School

Career Start Year 1989

Number of shared co-authors 19

John D Aitchison

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Career Start Year 1988

Number of shared co-authors 1

Lincoln Stein

Ontario Institute for Cancer Research, University Avenue

Career Start Year 1986

Number of shared co-authors 42

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 6

Martin Kuiper

Norwegian University of Science and Technology

Career Start Year 1983

Number of shared co-authors 18

Brenda J Andrews

University of Toronto

Career Start Year 1983

Number of shared co-authors 18

Charles Boone

University of Toronto

Career Start Year 1979

Number of shared co-authors 18

row(s) 1 - 30 of 30

Kim Rutherford

University of Cambridge

Co-authored papers 19

Midori A Harris

University of Cambridge

Co-authored papers 15

Antonia Lock

University College London

Co-authored papers 14

J??rg B??hler

University College London

Co-authored papers 12

Stephen G Oliver

University of Cambridge

Co-authored papers 11

Bart Barrell

Wellcome Trust Sanger Institute

Co-authored papers 10

Christopher J Mungall

International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences

Co-authored papers 7

Jacqueline Hayles

The Francis Crick Institute

Co-authored papers 5

Ruth C Lovering

University College London, Institute for Cardiovascular Science

Co-authored papers 5

Judith A Blake

Co-authored papers 5

Stacia R Engel

Stanford University

Co-authored papers 5