Author details

Full Name

Timothy Clark (CM4AI)

Affiliation

University of Virginia

ORCID

0000-0003-4060-7360

Career Start Year

2003

Papers

103

H Index

Expertise

Standards, findability accessibility interoperability and reusability systems, ontologies, data architecture

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37752153	Journal Production Guidance for Software and Data Citations.	Sci Data	2023
36075919	From biomedical cloud platforms to microservices: next steps in FAIR data and analysis.	Sci Data	2022
30935898	Novel methods for integration and visualization of genomics and genetics data in Alzheimer's disease.	Alzheimers Dement	2019
30890711	Addendum: The FAIR Guiding Principles for scientific data management and stewardship.	Sci Data	2019
30971690	A data citation roadmap for scholarly data repositories.	Sci Data	2019
29737976	Uniform resolution of compact identifiers for biomedical data.	Sci Data	2018
29806693	Neuronal calcineurin transcriptional targets parallel changes observed in Alzheimer disease brain.	J Neurochem	2018
30254196	Analysis of extracellular mRNA in human urine reveals splice variant biomarkers of muscular dystrophies.	Nat Commun	2018
30457573	A data citation roadmap for scientific publishers.	Sci Data	2018
29358399	Tau induces blood vessel abnormalities and angiogenesis-related gene expression in P301L transgenic mice and human Alzheimer's disease.	Proc Natl Acad Sci U S A	2018
27079753	Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease.	Alzheimers Dement	2016
26978244	The FAIR Guiding Principles for scientific data management and stewardship.	Sci Data	2016
26167542	Achieving human and machine accessibility of cited data in scholarly publications.	PeerJ Comput Sci	2015
24653693	Pain Research Forum: application of scientific social media frameworks in neuroscience.	Front Neuroinform	2014
26261718	Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications.	J Biomed Semantics	2014
25093072	Semantic Web repositories for genomics data using the eXframe platform.	J Biomed Semantics	2014
23808970	Improving data and knowledge management to better integrate health care and research.	J Intern Med	2013
25062675	Genome-wide increase in histone H2A ubiquitylation in a mouse model of Huntington's disease.	J Huntingtons Dis	2013
24267948	PAV ontology: provenance, authoring and versioning.	J Biomed Semantics	2013
22281772	Toward interoperable bioscience data.	Nat Genet	2012
22848491	Genome-wide histone acetylation is altered in a transgenic mouse model of Huntington's disease.	PLoS One	2012
22434839	A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.	Database (Oxford)	2012
22541592	Open semantic annotation of scientific publications using DOMEO.	J Biomed Semantics	2012
21624155	The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.	J Biomed Semantics	2011
26317061	The Future of Research Communication.	Dagstuhl Rep	2011
22103807	eXframe: reusable framework for storage, analysis and visualization of genomics experiments.	BMC Bioinformatics	2011
21624159	An open annotation ontology for science on web 3.0.	J Biomed Semantics	2011
19060302	Building biomedical web communities using a semantically aware content management system.	Brief Bioinform	2009
18583197	The SWAN biomedical discourse ontology.	J Biomed Inform	2008
18923047	Huntingtin modulates transcription, occupies gene promoters in vivo, and binds directly to DNA in a polyglutamine-dependent manner.	J Neurosci	2008
17493285	Advancing translational research with the Semantic Web.	BMC Bioinformatics	2007
18368375	Alzforum.	Methods Mol Biol	2007
17412603	Effects of gender on nigral gene expression and parkinson disease.	Neurobiol Dis	2007
17510163	Alzforum and SWAN: the present and future of scientific web communities.	Brief Bioinform	2007
17409194	Histones associated with downregulated genes are hypo-acetylated in Huntington's disease models.	Hum Mol Genet	2007
17493287	AlzPharm: integration of neurodegeneration data using RDF.	BMC Bioinformatics	2007
16625524	Clinical outcome in patients with bipolar I disorder, obsessive compulsive disorder or both.	Hum Psychopharmacol	2006
15153306	Globally distributed object identification for biological knowledgebases.	Brief Bioinform	2004
12715829	Identity and interoperability in bioinformatics.	Brief Bioinform	2003
14582520	Computational knowledge integration in biopharmaceutical research.	Brief Bioinform	2003

1 - 40 of 40

Lucy Lu Wang

University of Washington, USA Allen Institute for AI

Career Start Year 2015

Number of shared co-authors 1

Rajaram Kaliyaperumal

Leiden University Medical Center

Career Start Year 2015

Number of shared co-authors 21

Benjamin M Gyori

Khoury College of Computer Sciences, Northeastern University

Career Start Year 2014

Number of shared co-authors 10

Nicole Vasilevsky

Critical Path Institute

Career Start Year 2011

Number of shared co-authors 14

James Malone

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 34

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 25

Christopher J O Baker

University of New Brunswick

Career Start Year 2007

Number of shared co-authors 11

Jessica D Tenenbaum

Duke University

Career Start Year 2006

Number of shared co-authors 8

David Eichmann

The University of Iowa

Career Start Year 2006

Number of shared co-authors 2

Ibrahim Burak Ozyurt

SciCrunch Inc.

Career Start Year 2006

Number of shared co-authors 6

Helena F Deus

Elsevier Inc.

Career Start Year 2006

Number of shared co-authors 9

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Career Start Year 2005

Number of shared co-authors 5

Kristi L Holmes

Northwestern University Feinberg School of Medicine

Career Start Year 2004

Number of shared co-authors 2

Dietrich Rebholz-Schuhmann

University of Cologne

Career Start Year 2003

Number of shared co-authors 19

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 17

Philip R O Payne

Institute for Informatics, Washington University School of Medicine in St. Louis

Career Start Year 2003

Number of shared co-authors 3

Andrew I Su

The Scripps Research Institute

Career Start Year 2001

Number of shared co-authors 17

Indra Neil Sarkar

Center for Biomedical Informatics, Brown University

Career Start Year 2001

Number of shared co-authors 6

M??lanie Courtot

Ontario Institute for Cancer Research

Career Start Year 2001

Number of shared co-authors 35

Carl Kesselman

Information Sciences Institute, University of Southern California

Career Start Year 1999

Number of shared co-authors 1

Robert Stevens

The University of Manchester

Career Start Year 1998

Number of shared co-authors 21

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 12

Johanna McEntyre

EMBL's European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1994

Number of shared co-authors 25

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 10

Phillip Lord

Newcastle University

Career Start Year 1991

Number of shared co-authors 19

Alexa T McCray

Columbia University in the City of New York.

Career Start Year 1990

Number of shared co-authors 5

Prakash M Nadkarni

College of Nursing, University of Iowa Hospitals and Clinics

Career Start Year 1988

Number of shared co-authors 6

Warren A Kibbe

Duke Clinical Research Institute, Duke University

Career Start Year 1987

Number of shared co-authors 9

Christopher G Chute

Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota

Career Start Year 1985

Number of shared co-authors 15

Lynette Hirschman

The MITRE Corporation

Career Start Year 1981

Number of shared co-authors 19

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