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Author Details

Ami S Bhatt
Stanford University
2003
97
34
PMIDPaper TitleJournal TitlePublished Year
37231259Phage-inclusive profiling of human gut microbiomes with Phanta.Nat Biotechnol2024
37944820Acute Steroid-Refractory Gastrointestinal Graft-Versus-Host Disease Is Not Associated With Significant Differences in Gut Taxonomic Composition Compared to Steroid-Sensitive Gastrointestinal Graft-Versus-Host Disease Immediately Before Onset of Disease.Transplant Cell Ther2024
37106038Quantifying bias introduced by sample collection in relative and absolute microbiome measurements.Nat Biotechnol2024
36217031Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome.Nat Biotechnol2023
37693399Human gut metagenomic mining reveals an untapped source of peptide antibiotics.bioRxiv2023
38047235Identification of over ten thousand candidate structured RNAs in viruses and phages.Comput Struct Biotechnol J2023
37349583Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.Nat Chem Biol2023
37045824Antimicrobial exposure is associated with decreased survival in triple-negative breast cancer.Nat Commun2023
37342922Post-Transplantation Cyclophosphamide-Based Graft-versus-Host Disease Prophylaxis.N Engl J Med2023
37308590Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases.Nat Microbiol2023
37404180The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker.Appl Environ Microbiol2023
37329880The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia.Cell Host Microbe2023
36712100Tomato brown rugose fruit virus Mo gene is a novel microbial source tracking marker.bioRxiv2023
34599874Identification of covalent inhibitors that disrupt M. tuberculosis growth by targeting multiple serine hydrolases involved in lipid metabolism.Cell Chem Biol2022
37552722SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level.ACS ES T Water2022
35585088A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients.Sci Data2022
35434682Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection.Med2022
36542690Human β-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling.Sci Transl Med2022
36171273Equitable partnerships and the path to inclusive, innovative and impactful human microbiome research.Nat Rev Gastroenterol Hepatol2022
35863347Near-fatal Legionella pneumonia in a neonate linked to home humidifier by metagenomic next generation sequencing.Med2022
36030622From genome structure to function: insights into structural variation in microbiology.Curr Opin Microbiol2022
35102136Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults.Nat Commun2022
33290720Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes.Cell Host Microbe2021
33880485Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.medRxiv2021
33593727The gut microbiome: a missing link in understanding the gastrointestinal manifestations of COVID-19?Cold Spring Harb Mol Case Stud2021
33845850Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes.Genome Biol2021
33785743Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial.Nat Commun2021
34860566Implementing Patient-Directed Cancer Education Materials Across Nigeria.JCO Glob Oncol2021
34853336Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.Nat Commun2021
34381207Simultaneous ribosome profiling of hundreds of microbes from the human microbiome.Nat Protoc2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34599164Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.Nat Commun2021
34418822Comparative genomics of Enterobacter cloacae complex before and after acquired clinical resistance to Ceftazidime-Avibactam.Diagn Microbiol Infect Dis2021
34036317Invariant natural killer T-cell subsets have diverse graft-versus-host-disease-preventing and antitumor effects.Blood2021
34168315Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.Nat Microbiol2021
33277629Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome.Nat Protoc2021
32542357Glucagon-like peptide 2 for intestinal stem cell and Paneth cell repair during graft-versus-host disease in mice and humans.Blood2020
31862382A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation.Cell Host Microbe2020
32042169Complete, closed bacterial genomes from microbiomes using nanopore sequencing.Nat Biotechnol2020
32005821Author Correction: Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages.Nat Commun2020
31941900Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages.Nat Commun2020
33087519Structured RNA Contaminants in Bacterial Ribo-Seq.mSphere2020
33129264Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition.BMC Microbiol2020
33151772Recommendations from the ASCO Academic Global Oncology Task Force.JCO Glob Oncol2020
32601270MetaRibo-Seq measures translation in microbiomes.Nat Commun2020
33020496Microbes and microbiomes in 2020 and beyond.Nat Commun2020
32335989Assessing and Addressing the Need for Cancer Patient Education in a Resource-Limited Setting in Haiti.Oncologist2020
32471482Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.Genome Med2020
30665420Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation.Respir Res2019
31787070Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.BMC Bioinformatics2019
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Collaborators

Broad Institute
Co-authored papers 7
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Co-authored papers 6
Department of Pharmaceutical Chemistry, University of California san francisco
Co-authored papers 6
Co-authored papers 4
Institute for Human Genetics, University of California san francisco
Co-authored papers 3
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Co-authored papers 3
Stanford University
Co-authored papers 3
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University of Alabama at Birmingham
Co-authored papers 2
St Vincent's Hospital Melbourne
Co-authored papers 2
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Stanford University
Co-authored papers 2
Broad Institute of MIT and Harvard
Co-authored papers 2
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Dana-Farber Cancer Institute
Co-authored papers 2
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Addenbrooke's Hospital, University of Cambridge
Co-authored papers 1
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Virginia Commonwealth University
Co-authored papers 1
National Center for Toxicological Research
Co-authored papers 1
Sidney Kimmel Cancer Center, Johns Hopkins University
Co-authored papers 1
University of Minnesota, Mailman School of Public Health Columbia University
Co-authored papers 1
University of California san francisco
Co-authored papers 1
Department of Bioinformatics and Clinical Systems
Co-authored papers 1
Monash University
Co-authored papers 1
Brigham and Women's Hospital
Co-authored papers 1
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 1
Paris Center for Microbiome Medicine
Co-authored papers 1
Broad Institute of Massachusetts Institute of Technology and Harvard
Co-authored papers 1
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 1