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Author Details

Ryan M Layer
Boulder and BioFrontiers Institute, University of Colorado Boulder
2011
32
21
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35298919RAREsim: A simulation method for very rare genetic variants.Am J Hum Genet2022
35396485Searching thousands of genomes to classify somatic and novel structural variants using STIX.Nat Methods2022
35357935A complete reference genome improves analysis of human genetic variation.Science2022
35618956Author Correction: Searching thousands of genomes to classify somatic and novel structural variants using STIX.Nat Methods2022
34034781Samplot: a platform for structural variant visual validation and automated filtering.Genome Biol2021
33574832Editorial: Genomic Colocalization and Enrichment Analyses.Front Genet2021
33732289Identification of High-Confidence Structural Variants in Domesticated Rainbow Trout Using Whole-Genome Sequencing.Front Genet2021
32479598Regulatory sharing between estrogen receptor α bound enhancers.Nucleic Acids Res2020
33056985The structural variation landscape in 492 Atlantic salmon genomes.Nat Commun2020
32194629webGQT: A Shiny Server for Genotype Query Tools for Model-Based Variant Filtering.Front Genet2020
30531870A map of constrained coding regions in the human genome.Nat Genet2019
31218349svtools: population-scale analysis of structural variation.Bioinformatics2019
29309061GIGGLE: a search engine for large-scale integrated genome analysis.Nat Methods2018
29860504SV-plaudit: A cloud-based framework for manually curating thousands of structural variants.Gigascience2018
29873782Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.Nucleic Acids Res2018
30109124Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy.NPJ Genom Med2018
29700473An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder.Nat Genet2018
29402882Publisher Correction: Combating subclonal evolution of resistant cancer phenotypes.Nat Commun2018
29093439Combating subclonal evolution of resistant cancer phenotypes.Nat Commun2017
30333632A parallel algorithm for <i>N</i>-way interval set intersection.Proc IEEE Inst Electr Electron Eng2017
27250555Vcfanno: fast, flexible annotation of genetic variants.Genome Biol2016
26550772Efficient genotype compression and analysis of large genetic-variation data sets.Nat Methods2016
25403490MUNC, a long noncoding RNA that facilitates the function of MyoD in skeletal myogenesis.Mol Cell Biol2015
26258291SpeedSeq: ultra-fast personal genome analysis and interpretation.Nat Methods2015
23503464Regulation of several androgen-induced genes through the repression of the miR-99a/let-7c/miR-125b-2 miRNA cluster in prostate cancer cells.Oncogene2014
24970577LUMPY: a probabilistic framework for structural variant discovery.Genome Biol2014
23129298Binary Interval Search: a scalable algorithm for counting interval intersections.Bioinformatics2013
23410887Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms.Genome Res2013
22403181Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.Science2012
23055528Notch3 and Mef2c proteins are mutually antagonistic via Mkp1 protein and miR-1/206 microRNAs in differentiating myoblasts.J Biol Chem2012
21423757Nuclear scaffold attachment sites within ENCODE regions associate with actively transcribed genes.PLoS One2011
21471220MicroRNA-378 targets the myogenic repressor MyoR during myoblast differentiation.J Biol Chem2011
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Collaborators

Aaron R Quinlan
University of Utah
Co-authored papers 19
Brent S Pedersen
Center for Molecular Medicine, University Medical Center Utrecht
Co-authored papers 10
Anindya Dutta
Co-authored papers 6
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Baylor College of Medicine
Co-authored papers 3
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Huntsman Cancer Institute, University of Utah
Co-authored papers 2
Geir Kjetil Sandve
University of Oslo
Co-authored papers 2
Joe W Gray
Oregon Health and Science University
Co-authored papers 2
Chakravarthi Kanduri
University of Oslo
Co-authored papers 2
Stephen R Piccolo
Brigham Young University
Co-authored papers 2
Zhen Yan
Co-authored papers 2
Joel S Parker
Lineberger Cancer Center, University of North Carolina
Co-authored papers 2
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Oregon Health Sciences University
Co-authored papers 2
Andrew Farrell
Utah Center for Genetic Discovery, University of Utah
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Joseph D Buxbaum
Icahn School of Medicine at Mount Sinai
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Chunlin Xiao
Chongqing Aier Eye Hospital
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Nathan D Olson
National Institute of Standards and Technology
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University of Virginia School of Medicine
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Christopher M Taylor
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Stephan J Sanders
Co-authored papers 1
Sveinung Gundersen
Center for Bioinformatics, University of Oslo
Co-authored papers 1
Jennifer McDaniel
National Institute of Standards and Technology
Co-authored papers 1
Justin M Zook
National Institute of Standards and Technology
Co-authored papers 1
Eivind Hovig
Center for Bioinformatics, University of Oslo
Co-authored papers 1
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 1
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 1
Andrey A Mironov
Lomonosov Moscow State University
Co-authored papers 1
Alexander V Favorov
Johns Hopkins School of Medicine
Co-authored papers 1
Konrad J Karczewski
Broad Institute of MIT and Harvard
Co-authored papers 1
Mark J Daly
Massachusetts General Hospital
Co-authored papers 1
Michael C Schatz
Johns Hopkins University
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Release 1.2