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Author Details

Zhen Ye
Ludwig Institute for Cancer Research, University of California San Diego
2002
45
29
PMIDPaper TitleJournal TitlePublished Year
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
37155843Integrated analysis of single-cell chromatin state and transcriptome identified common vulnerability despite glioblastoma heterogeneity.Proc Natl Acad Sci U S A2023
35076584Direct Comparison of Chol-siRNA Polyplexes and Chol-DsiRNA Polyplexes Targeting STAT3 in a Syngeneic Murine Model of TNBC.Noncoding RNA2022
35076584Direct Comparison of Chol-siRNA Polyplexes and Chol-DsiRNA Polyplexes Targeting STAT3 in a Syngeneic Murine Model of TNBC.Noncoding RNA2022
33469364GSK-3β Regulates the Expression of P21 to Promote the Progression of Chordoma.Cancer Manag Res2021
33545405Preliminary preclinical study of Chol-DsiRNA polyplexes formed with PLL[30]-PEG[5K] for the RNAi-based therapy of breast cancer.Nanomedicine2021
33469364GSK-3β Regulates the Expression of P21 to Promote the Progression of Chordoma.Cancer Manag Res2021
33880049Atorvastatin Regulates MALAT1/miR-200c/NRF2 Activity to Protect Against Podocyte Pyroptosis Induced by High Glucose.Diabetes Metab Syndr Obes2021
34955116GSDMD-mediated pyroptosis: a critical mechanism of diabetic nephropathy.Expert Rev Mol Med2021
33880049Atorvastatin Regulates MALAT1/miR-200c/NRF2 Activity to Protect Against Podocyte Pyroptosis Induced by High Glucose.Diabetes Metab Syndr Obes2021
33545405Preliminary preclinical study of Chol-DsiRNA polyplexes formed with PLL[30]-PEG[5K] for the RNAi-based therapy of breast cancer.Nanomedicine2021
34955116GSDMD-mediated pyroptosis: a critical mechanism of diabetic nephropathy.Expert Rev Mol Med2021
31118816Long noncoding RNA DLX6-AS1 promotes tumorigenesis by modulating miR-497-5p/FZD4/FZD6/Wnt/β-catenin pathway in pancreatic cancer.Cancer Manag Res2019
31579577Identification and characterization of circRNAs as competing endogenous RNAs for miRNA-mRNA in colorectal cancer.PeerJ2019
31519520Transcription Factor-Directed Re-wiring of Chromatin Architecture for Somatic Cell Nuclear Reprogramming toward trans-Differentiation.Mol Cell2019
31118816Long noncoding RNA DLX6-AS1 promotes tumorigenesis by modulating miR-497-5p/FZD4/FZD6/Wnt/β-catenin pathway in pancreatic cancer.Cancer Manag Res2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
31579577Identification and characterization of circRNAs as competing endogenous RNAs for miRNA-mRNA in colorectal cancer.PeerJ2019
31519520Transcription Factor-Directed Re-wiring of Chromatin Architecture for Somatic Cell Nuclear Reprogramming toward trans-Differentiation.Mol Cell2019
31427791Transcriptionally active HERV-H retrotransposons demarcate topologically associating domains in human pluripotent stem cells.Nat Genet2019
29313530Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
30135582RAP2 mediates mechanoresponses of the Hippo pathway.Nature2018
29601972Complexation of Chol-DsiRNA in place of Chol-siRNA greatly increases the duration of mRNA suppression by polyplexes of PLL(30)-PEG(5K) in primary murine syngeneic breast tumors after i.v. administration.Int J Pharm2018
29497152Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
29802201The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell.J Biol Chem2018
29313530Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
30135582RAP2 mediates mechanoresponses of the Hippo pathway.Nature2018
29802201The Hippo pathway effector proteins YAP and TAZ have both distinct and overlapping functions in the cell.J Biol Chem2018
29497152Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers.Cell Res2018
29601972Complexation of Chol-DsiRNA in place of Chol-siRNA greatly increases the duration of mRNA suppression by polyplexes of PLL(30)-PEG(5K) in primary murine syngeneic breast tumors after i.v. administration.Int J Pharm2018
26218648A neutral polydisulfide containing Gd(III) DOTA monoamide as a redox-sensitive biodegradable macromolecular MRI contrast agent.Contrast Media Mol Imaging2016
26218648A neutral polydisulfide containing Gd(III) DOTA monoamide as a redox-sensitive biodegradable macromolecular MRI contrast agent.Contrast Media Mol Imaging2016
24962810Characterization of Cardiac Anoctamin1 Ca²⁺-Activated Chloride Channels and Functional Role in Ischemia-Induced Arrhythmias.J Cell Physiol2015
25693564Chromatin architecture reorganization during stem cell differentiation.Nature2015
26268681Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions.Genome Biol2015
26455392EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling.Mol Cell2015
24962810Characterization of Cardiac Anoctamin1 Ca²⁺-Activated Chloride Channels and Functional Role in Ischemia-Induced Arrhythmias.J Cell Physiol2015
26268681Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions.Genome Biol2015
26455392EGFR Mutation Promotes Glioblastoma through Epigenome and Transcription Factor Network Remodeling.Mol Cell2015
25693564Chromatin architecture reorganization during stem cell differentiation.Nature2015
23471641Synthesis and evaluation of a targeted nanoglobular dual-modal imaging agent for MR imaging and image-guided surgery of prostate cancer.Pharm Res2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
252635965mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.Mol Cell2014
24335803Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.Proc Natl Acad Sci U S A2014
23471641Synthesis and evaluation of a targeted nanoglobular dual-modal imaging agent for MR imaging and image-guided surgery of prostate cancer.Pharm Res2014
25409824A comparative encyclopedia of DNA elements in the mouse genome.Nature2014
252635965mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation.Mol Cell2014
24335803Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells.Proc Natl Acad Sci U S A2014
23606425Synthesis and evaluation of a polydisulfide with Gd-DOTA monoamide side chains as a biodegradable macromolecular contrast agent for MR blood pool imaging.Contrast Media Mol Imaging2013
24141950A high-resolution map of the three-dimensional chromatin interactome in human cells.Nature2013
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Collaborators

Bing Ren
Center for Epigenomics, University of California San Diego
Co-authored papers 26
Samantha Kuan
University of California San Diego
Co-authored papers 11
Lee E Edsall
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 11
Gary C Hon
Cecil H. and Ida Green Center for Reproductive Biology Sciences
Co-authored papers 7
Ah Young Lee
Co-authored papers 6
Robert D Hawkins
Co-authored papers 6
James A Thomson
Co-authored papers 6
Jessica Antosiewicz-Bourget
Co-authored papers 6
Leonard K Lee
Co-authored papers 5
Yunjiang Qiu
Ludwig Institute for Cancer Research, University of California
Co-authored papers 5
Ron Stewart
Co-authored papers 5
Joseph R Ecker
The Salk Institute for Biological Studies
Co-authored papers 5
Xiang-Dong Fu
Co-authored papers 4
Sebastian Preissl
Center for Epigenomics, University of California San Diego
Co-authored papers 4
Yin Shen
Wenzhou Medical University
Co-authored papers 4
Ryan Lister
Co-authored papers 4
Roland D Green
NimbleGen Systems Inc.
Co-authored papers 3
Mattia Pelizzola
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Co-authored papers 3
Nisha Rajagopal
Co-authored papers 3
Minh Ngo
Co-authored papers 3
Yarui Diao
Duke University Medical Center
Co-authored papers 3
Thomas R Gingeras
Stanley Institute for Cognitive Genomics
Co-authored papers 3
Keith A Ching
Co-authored papers 3
Robert L Strausberg
Ludwig Institute for Cancer Research
Co-authored papers 3
Sarit Klugman
Co-authored papers 3
Siddarth Selvaraj
Co-authored papers 3
Celso A Espinoza
Ludwig Institute for Cancer Research
Co-authored papers 3
Sherman M Weissman
Co-authored papers 3
Otavia L Caballero
Ludwig Institute for Cancer Research Ltd.
Co-authored papers 3
Anamaria A Camargo
Hospital Sirio-Libanes
Co-authored papers 3
Release 1.2