Author details

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Full Name

Xinmin Zhang

Affiliation

ORCID

Career Start Year

2007

Papers

18

H Index

13

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36806691	RNASequest: An End-to-End Reproducible RNAseq Data Analysis and Publishing Framework.	J Mol Biol	2023
37131143	scRNASequest: an ecosystem of scRNA-seq analysis, visualization, and publishing.	BMC Genomics	2023
35970860	Single-cell transcriptomic profiling unveils dysregulation of cardiac progenitor cells and cardiomyocytes in a mouse model of maternal hyperglycemia.	Communications Biology	2022
26911705	MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.	BMC Bioinformatics	2016
22615905	Functions of protosilencers in the formation and maintenance of heterochromatin in Saccharomyces cerevisiae.	PLoS ONE	2012
21592371	Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.	BMC Genomics	2011
21441216	Differential contributions of histone H3 and H4 residues to heterochromatin structure.	Genetics	2011
21388962	Roles of chromatin remodeling factors in the formation and maintenance of heterochromatin structure.	Journal of Biological Chemistry	2011
19910506	DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model.	Clinical Chemistry	2010
19386619	High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.	Nucleic Acids Res	2009
19295514	Histone modifications at human enhancers reflect global cell-type-specific gene expression.	Nature	2009
18787694	The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.	PLoS Genet	2008
19056895	Chromatin structure analyses identify miRNA promoters.	Genes Dev	2008
18258921	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.	Genome Res	2008
18818370	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.	Genome Res	2008
18251256	Genome-scale ChIP-chip analysis using 10,000 human cells.	Biotechniques	2007
17293863	X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.	Nat Genet	2007
17727723	Model-based analysis of two-color arrays (MA2C).	Genome Biol	2007

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NimbleGen Systems Inc.

Co-authored papers 7

University of Illinois at Urbana-Champaign

Co-authored papers 3

Xiaole Shirley Liu

Co-authored papers 3

The University of Chicago

Co-authored papers 3

Yu H Sun

Co-authored papers 2

Peggy J Farnham

Keck School of Medicine of USC

Co-authored papers 2

Co-authored papers 2

Bing Ren

Center for Epigenomics, University of California San Diego

Co-authored papers 2

Heather Holster

Co-authored papers 2

Co-authored papers 2

Christina M Whittle

Co-authored papers 2

Biogen Inc.

Co-authored papers 2

Wei Li

Co-authored papers 2

Zhen Ye

Ludwig Institute for Cancer Research, University of California San Diego

Co-authored papers 2

Alexander Karpikov

Co-authored papers 1

Whitehead Institute for Biomedical Research

Co-authored papers 1

Yale University

Co-authored papers 1

University of Melbourne, The University of Melbourne

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

Cecil H. and Ida Green Center for Reproductive Biology Sciences

Co-authored papers 1

Stefan Schreiber

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

Massachusetts Institute of Technology

Co-authored papers 1

the University of Texas MD Anderson Cancer Center

Co-authored papers 1

Co-authored papers 1

Co-authored papers 1

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