Author details

Full Name

Yussanne Ma

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
35140225	A platform for oncogenomic reporting and interpretation.	Nat Commun	2022
34907396	Retraction Note: Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.	Nat Neurosci	2022
35121966	Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes.	Nat Cancer	2020
32424282	Tumor necrosis factor overcomes immune evasion in p53-mutant medulloblastoma.	Nat Neurosci	2020
32747824	Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes.	Nat Genet	2020
32577165	Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patients.	Oncotarget	2020
30833417	Base excision repair deficiency signatures implicate germline and somatic <i>MUTYH</i> aberrations in pancreatic ductal adenocarcinoma and breast cancer oncogenesis.	Cold Spring Harb Mol Case Stud	2019
31708418	Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration.	Cell Rep	2019
30514790	Clinical outcomes after whole-genome sequencing in patients with metastatic non-small-cell lung cancer.	Cold Spring Harb Mol Case Stud	2019
30016509	MAVIS: merging, annotation, validation, and illustration of structural variants.	Bioinformatics	2019
30418619	Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples.	Nucleic Acids Res	2019
30617194	Genome-wide discovery of somatic coding and noncoding mutations in pediatric endemic and sporadic Burkitt lymphoma.	Blood	2019
30705421	Publisher Correction: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.	Nat Med	2019
31026023	Application of a Neural Network Whole Transcriptome-Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.	JAMA Netw Open	2019
30744412	A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood.	Biotechniques	2019
31471491	Comprehensive genomic profiling of glioblastoma tumors, BTICs, and xenografts reveals stability and adaptation to growth environments.	Proc Natl Acad Sci U S A	2019
31068372	<i>NRG1</i> Gene Fusions Are Recurrent, Clinically Actionable Gene Rearrangements in <i>KRAS</i> Wild-Type Pancreatic Ductal Adenocarcinoma.	Clin Cancer Res	2019
31249064	High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma.	Genome Res	2019
31372595	Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer.	JCO Precis Oncol	2018
30068734	Corrigendum: Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline <i>CHEK2</i>:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcinoma.	Cold Spring Harb Mol Case Stud	2018
30209392	The genetic basis and cell of origin of mixed phenotype acute leukaemia.	Nature	2018
29872726	Whole genome and whole transcriptome genomic profiling of a metastatic eccrine porocarcinoma.	NPJ Precis Oncol	2018
29856958	A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases.	Cell	2018
29227476	The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.	Nat Med	2018
29610392	Personalized oncogenomic analysis of metastatic adenoid cystic carcinoma: using whole-genome sequencing to inform clinical decision-making.	Cold Spring Harb Mol Case Stud	2018
29474906	A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases.	Cell	2018
29551561	Opposing Effects of CREBBP Mutations Govern the Phenotype of Rubinstein-Taybi Syndrome and Adult SHH Medulloblastoma.	Dev Cell	2018
29634680	Erratum: The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions.	Nat Med	2018
29775543	Native bacterial communities and Listeria monocytogenes survival in soils collected from the Lower Mainland of British Columbia, Canada.	Canadian Journal of Microbiology	2018
29232880	The Genome of the Northern Sea Otter (Enhydra lutris kenyoni).	Genes (Basel)	2017
28825729	A Children's Oncology Group and TARGET initiative exploring the genetic landscape of Wilms tumor.	Nat Genet	2017
28950338	Successful targeting of the NRG1 pathway indicates novel treatment strategy for metastatic cancer.	Ann Oncol	2017
28726821	The whole-genome landscape of medulloblastoma subtypes.	Nature	2017
28854430	Genomic and Cytogenetic Characterization of a Balanced Translocation Disrupting NUP98.	Cytogenetic and Genome Research	2017
28679365	Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing.	BMC Genomics	2017
28854171	Fate mapping of human glioblastoma reveals an invariant stem cell hierarchy.	Nature	2017
28570594	Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.	PLoS One	2017
28403581	Correction: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.	Oncotarget	2017
28515149	Pyruvate Kinase Inhibits Proliferation during Postnatal Cerebellar Neurogenesis and Suppresses Medulloblastoma Formation.	Cancer Res	2017
28514723	Genomic profiling of pelvic genital type leiomyosarcoma in a woman with a germline <i>CHEK2</i>:c.1100delC mutation and a concomitant diagnosis of metastatic invasive ductal breast carcinoma.	Cold Spring Harb Mol Case Stud	2017
28394352	Spatial heterogeneity in medulloblastoma.	Nat Genet	2017
29246904	Homologous Recombination Deficiency and Platinum-Based Therapy Outcomes in Advanced Breast Cancer.	Clin Cancer Res	2017
29068783	MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia.	J Clin Oncol	2017
29232881	The Genome of the Beluga Whale (Delphinapterus leucas).	Genes (Basel)	2017
27824051	Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia.	Nat Commun	2016
26760213	Divergent clonal selection dominates medulloblastoma at recurrence.	Nature	2016
26977886	Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways.	Cancer Cell	2016
27022066	Response to angiotensin blockade with irbesartan in a patient with metastatic colorectal cancer.	Ann Oncol	2016
27143256	CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML.	Blood	2016
27094764	A somatic reference standard for cancer genome sequencing.	Sci Rep	2016