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Author Details

Dina Schneidman-Duhovny
The Hebrew University of Jerusalem
2003
84
39
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36641210Multi-state modeling of antibody-antigen complexes with SAXS profiles and deep-learning models.Methods Enzymol2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
36641210Multi-state modeling of antibody-antigen complexes with SAXS profiles and deep-learning models.Methods Enzymol2023
37070547A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data.Proteomics2023
37311459The Cdc48 N-terminal domain has a molecular switch that mediates the Npl4-Ufd1-Cdc48 complex formation.Structure2023
37293053Predicting structures of large protein assemblies using combinatorial assembly algorithm and AlphaFold2.bioRxiv2023
37905971Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment.Proteins2023
37311459The Cdc48 N-terminal domain has a molecular switch that mediates the Npl4-Ufd1-Cdc48 complex formation.Structure2023
37070547A deep learning model for predicting optimal distance range in crosslinking mass spectrometry data.Proteomics2023
37293053Predicting structures of large protein assemblies using combinatorial assembly algorithm and AlphaFold2.bioRxiv2023
35194608Reduced antigenicity of Omicron lowers host serologic response.bioRxiv2022
36032123NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning.Front Immunol2022
35577850Integrative structure determination reveals functional global flexibility for an ultra-multimodular arabinanase.Commun Biol2022
36223774Reduced B cell antigenicity of Omicron lowers host serologic response.Cell Rep2022
35637310ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction.Nat Methods2022
35738279Superimmunity by pan-sarbecovirus nanobodies.Cell Rep2022
36116806ScanNet: A Web Server for Structure-based Prediction of Protein Binding Sites with Geometric Deep Learning.J Mol Biol2022
35194608Reduced antigenicity of Omicron lowers host serologic response.bioRxiv2022
35738279Superimmunity by pan-sarbecovirus nanobodies.Cell Rep2022
35577850Integrative structure determination reveals functional global flexibility for an ultra-multimodular arabinanase.Commun Biol2022
35637310ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction.Nat Methods2022
36032123NanoNet: Rapid and accurate end-to-end nanobody modeling by deep learning.Front Immunol2022
36223774Reduced B cell antigenicity of Omicron lowers host serologic response.Cell Rep2022
36116806ScanNet: A Web Server for Structure-based Prediction of Protein Binding Sites with Geometric Deep Learning.J Mol Biol2022
34373319Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2.Proc Natl Acad Sci U S A2021
33592195Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies.Cell Syst2021
33568648Cryo-EM structures of engineered active bc<sub>1</sub>-cbb<sub>3</sub> type CIII<sub>2</sub>CIV super-complexes and electronic communication between the complexes.Nat Commun2021
34344900Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes.Nat Commun2021
33758850Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes.bioRxiv2021
34522857A resource of high-quality and versatile nanobodies for drug delivery.iScience2021
34373319Targeted in situ cross-linking mass spectrometry and integrative modeling reveal the architectures of three proteins from SARS-CoV-2.Proc Natl Acad Sci U S A2021
33568648Cryo-EM structures of engineered active bc<sub>1</sub>-cbb<sub>3</sub> type CIII<sub>2</sub>CIV super-complexes and electronic communication between the complexes.Nat Commun2021
33592195Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies.Cell Syst2021
33758850Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes.bioRxiv2021
34522857A resource of high-quality and versatile nanobodies for drug delivery.iScience2021
34344900Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes.Nat Commun2021
32504085Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness.Hum Mol Genet2020
32022859Dynamic Evolution of the Cthrc1 Genes, a Newly Defined Collagen-Like Family.Genome Biol Evol2020
32365751The SARS-CoV-2 Exerts a Distinctive Strategy for Interacting with the ACE2 Human Receptor.Viruses2020
32006285Modeling of Multimolecular Complexes.Methods Mol Biol2020
33154108Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.Science2020
32815282De novo STXBP1 mutation in a child with developmental delay and spasticity reveals a major structural alteration in the interface with syntaxin 1A.Am J Med Genet B Neuropsychiatr Genet2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
32869034Versatile, Multivalent Nanobody Cocktails Efficiently Neutralize SARS-CoV-2.bioRxiv2020
32504085Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness.Hum Mol Genet2020
32022859Dynamic Evolution of the Cthrc1 Genes, a Newly Defined Collagen-Like Family.Genome Biol Evol2020
32006285Modeling of Multimolecular Complexes.Methods Mol Biol2020
33303586Genetic interaction mapping informs integrative structure determination of protein complexes.Science2020
33154108Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.Science2020
32869034Versatile, Multivalent Nanobody Cocktails Efficiently Neutralize SARS-CoV-2.bioRxiv2020
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Collaborators

University of California San Francisco
Co-authored papers 31
Tel Aviv University
Co-authored papers 24
Sackler School of Medicine, Tel Aviv University
Co-authored papers 16
University of California san francisco
Co-authored papers 10
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 9
Co-authored papers 8
University of California san francisco
Co-authored papers 7
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Co-authored papers 7
The Scripps Research Institute
Co-authored papers 7
Korea Advanced Institute of Science and Technology (KAIST)
Co-authored papers 7
Lawrence Berkeley National Laboratory
Co-authored papers 6
CNRS UMR 5086 and Universite Claude Bernard Lyon 1
Co-authored papers 5
University of California san francisco
Co-authored papers 5
The University of Texas MD Anderson Cancer Center
Co-authored papers 4
University of California san francisco
Co-authored papers 4
US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 4
Cincinnati Children's Hospital Medical Center
Co-authored papers 4
College of Biotechnology and Bioengineering, Zhejiang University of Technology
Co-authored papers 3
Case Western Reserve University
Co-authored papers 3
Institute of Life Sciences, The Hebrew University of Jerusalem
Co-authored papers 3
International University of Health and Welfare (IUHV Hospital)
Co-authored papers 2
Choju-Medical Institute, Fukushimuta Hospital
Co-authored papers 2
Dalton Cardiovascular Research Center, University of Missouri
Co-authored papers 2
Utrecht University
Co-authored papers 2
University of California san francisco
Co-authored papers 2
University of California san francisco
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Institute of Life Sciences, The Hebrew University
Co-authored papers 2
Boston University
Co-authored papers 2
VIB-VUB Center for Structural Biology
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University of California San Francisco
Co-authored papers 2